View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_48 (Length: 311)
Name: NF17897_low_48
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_48 |
 | |
|
| [»] scaffold0187 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0187 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 2388 - 2672
Alignment:
| Q |
14 |
atttcattatgtgcattactttattacataagatttgggtagaaaactagacccttgtaagttcaaatataaatttcagtttcatgattaagtagtaaat |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2388 |
atttcattatgtgcattactttattgcataagatttcggtagaaaactagacccttgtaagttcaaatataaatttcagtttcatgattaagtagtaaat |
2487 |
T |
|
| Q |
114 |
attttgggcacctatatgacatgcttataagacggcccctgtacattcacctcctttctgttattctattactgactagtttttcactagacattatgtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488 |
attttgggcacctatatgacatgcttataagacggcacctgtacattcacctcctttctgttattctattactgactagtttttcactagacattatgtt |
2587 |
T |
|
| Q |
214 |
tttgtatccaacagttactccaatttttctataaacagtctgaatgt-----gtgaatgtataatttccccgagtgaaaggaatttg |
295 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2588 |
tttgtatccaacagttactccaa--tttctataaacagtctgaatgtgtgaagtgaatgtataatttccccgagtgaaaggaatttg |
2672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 37873413 - 37873278
Alignment:
| Q |
106 |
tagtaaatattttgggcacct-atatgacatgcttataagacggcccctgtacattcacctcctttctgttattctattactgactagtttttcactaga |
204 |
Q |
| |
|
|||||||||||||||||| || | |||| | ||||||||| ||| | |||||||||| | ||| || |||||||||| ||| |||| |||| ||| ||| |
|
|
| T |
37873413 |
tagtaaatattttgggcagctgaaatgattttcttataagatggcacatgtacattcatcccctctcggttattctataactaactaatttt-cacaaga |
37873315 |
T |
|
| Q |
205 |
cattatgtttttgtatccaacagttactccaattttt |
241 |
Q |
| |
|
||| ||||||| ||||| ||| |||||||||||||| |
|
|
| T |
37873314 |
catcatgttttggtatcaaacgattactccaattttt |
37873278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 37863973 - 37863871
Alignment:
| Q |
135 |
tgcttataagacggcccctgtacattcacctcctttctgttattctattactgactagtttttcactagacattatgtttttgtatccaacagttactcc |
234 |
Q |
| |
|
||||||||||| ||| | |||||||||| || |||||| ||||||| ||| || ||| ||||||| |||||| ||||||| || ||||||| | ||||| |
|
|
| T |
37863973 |
tgcttataagatggcacatgtacattcatctactttctcttattcttttattggcta-attttcacaagacatcatgttttggtgtccaacactaactcc |
37863875 |
T |
|
| Q |
235 |
aatt |
238 |
Q |
| |
|
|||| |
|
|
| T |
37863874 |
aatt |
37863871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 37891154 - 37891028
Alignment:
| Q |
110 |
aaatattttgggcacctatatgacatgcttataagacggcccctgtacattcacctcctttctgttattctattactgactagtttttcactagacatta |
209 |
Q |
| |
|
||||||||| |||| |||||||| || ||| ||||| || | |||||||| | |||| |||||||||||||| |||||| |||| | |||||||| | |
|
|
| T |
37891154 |
aaatattttaggcatctatatgatatacttgtaagatagcacatgtacattaatctcca--ctgttattctattagtgactaatttt-cgctagacatca |
37891058 |
T |
|
| Q |
210 |
tgtttttgtatccaacagttactccaattt |
239 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| |
|
|
| T |
37891057 |
tgttttgatatctaaccgttactccaattt |
37891028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University