View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_49 (Length: 310)
Name: NF17897_low_49
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 33565165 - 33564862
Alignment:
| Q |
7 |
agcagagaaagttatataattctcatctctcccaatccaatattcatatatggactctttaatggttttcctacttctaacaaaccaaaattttgaagac |
106 |
Q |
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| T |
33565165 |
agcagagaaagttatataattctcatctctcccaatccaatattcatatatggactctttaatggttttcctacttctaacaaaccaaaattttgaagac |
33565066 |
T |
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| Q |
107 |
agttagtaaatgagaaactccagtcaagaatctaataattgtttcagactgaaaatacatttggtgatgactgtgcagacccattttctagtaaaaagct |
206 |
Q |
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| T |
33565065 |
agttaataaatgagaaactccagtcaagaatctaataattgtttcagactgaaaatacatttggtgatgactgtgcagacccattttctagtaaaaaact |
33564966 |
T |
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| Q |
207 |
tctactacaatacgaccgagatgtacttgaagatgaagcaagatatcttccatccccactgtgaaaatttccttcatttctgagcatttttcctttgctt |
306 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33564965 |
tctactacaatacgaccgagatgtacttgaagacgaagcaagatatcttccatccccactgtgaaaatttccttcatttctgagcatttttcctttgctt |
33564866 |
T |
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| Q |
307 |
cttc |
310 |
Q |
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|||| |
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| T |
33564865 |
cttc |
33564862 |
T |
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