View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_52 (Length: 305)
Name: NF17897_low_52
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 30099013 - 30098722
Alignment:
| Q |
1 |
caccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaacatttgtctccaaccacnnnnnnnntagttacctgc |
100 |
Q |
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| T |
30099013 |
caccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaacatttgtctccaacaacaaaaaaaatagttacctgc |
30098914 |
T |
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| Q |
101 |
aacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaa |
200 |
Q |
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| T |
30098913 |
aacagttgatgatgtgtgagttccatgccctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaa |
30098814 |
T |
|
| Q |
201 |
tatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctt |
292 |
Q |
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| T |
30098813 |
tatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttctt |
30098722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 90 - 292
Target Start/End: Original strand, 30091942 - 30092144
Alignment:
| Q |
90 |
tagttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacac |
189 |
Q |
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| T |
30091942 |
tagttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatcacac |
30092041 |
T |
|
| Q |
190 |
ctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaatttt |
289 |
Q |
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| T |
30092042 |
ctttgttgaaagatctagctccaatcagtttgaagttgcacatggaggcattgaatttatggccagtttcacatgttcctttccatttgttcggaatttt |
30092141 |
T |
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| Q |
290 |
ctt |
292 |
Q |
| |
|
||| |
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| T |
30092142 |
ctt |
30092144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 292
Target Start/End: Original strand, 30087982 - 30088186
Alignment:
| Q |
91 |
agttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaa---gcaatcac |
187 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||| | |||||||| |
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| T |
30087982 |
agttacctgcaacagttgatgatgtatgagttccatgtccgatactgtctctagctgagttcttgctgattccaacatttcgatagttacctgcaatcac |
30088081 |
T |
|
| Q |
188 |
acctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaatt |
287 |
Q |
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|||||| |||||| |||| |||||||||| ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30088082 |
acctttattgaaagatcttgctccaatcagtttgaagttgcacacggaggcattgaatttatggccagtttcacatgttcctttccatttgtttggaatt |
30088181 |
T |
|
| Q |
288 |
ttctt |
292 |
Q |
| |
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||||| |
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| T |
30088182 |
ttctt |
30088186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 298
Target Start/End: Original strand, 35171586 - 35171779
Alignment:
| Q |
105 |
gttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatc |
204 |
Q |
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||||||||||||||| | ||||||||| |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||||| |
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| T |
35171586 |
gttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatc |
35171685 |
T |
|
| Q |
205 |
tagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaattttcttcgacat |
298 |
Q |
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|||||||||| ||||| ||||||||||| || || ||||| ||||| || | || |||| ||||||||||||| |||| || || |||||||| |
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| T |
35171686 |
tagctccaattaatttcaagttacacatagaagtgttgaaatcttgtcctgcttgacattttcctttccattttgttgggatgtttttcgacat |
35171779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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