View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_55 (Length: 290)
Name: NF17897_low_55
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 3654561 - 3654438
Alignment:
| Q |
2 |
tgtacttcctgaggctgtaaggataagaatctgcaagcaaaataattgttagaaaagaaaaaataattatatcatataggtgaagtttttagaacagaca |
101 |
Q |
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| T |
3654561 |
tgtacttcctgaggctgtaaggataagaatctgcaagcaaaataattgtcagaaaagaaaaaaaaattatatcatataggtgaagtttttagaacagaca |
3654462 |
T |
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| Q |
102 |
tatttaatcaaagtcttatattag |
125 |
Q |
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|||||||||||||||||||||||| |
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| T |
3654461 |
tatttaatcaaagtcttatattag |
3654438 |
T |
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Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 118 - 286
Target Start/End: Complemental strand, 3653973 - 3653805
Alignment:
| Q |
118 |
tatattaggccaaacaaatttatatatggatgtggaaagtatggtcttgactattttatcatataggtgaagnnnnnnnnatagatagttccttgatact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3653973 |
tatattaggccaaacaaatttatatatggatgtggaaattatggtcttgactattttatcatataggtgaagtttttttcacagatagttccttgatact |
3653874 |
T |
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| Q |
218 |
catataacatctcattttctctgtatcttgctttctatcgtatcgttttctctatttttcttcactctc |
286 |
Q |
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| T |
3653873 |
catgtaacatctaattttctctatatctcgctttctattgtatcgttttctctatttttgttctctctc |
3653805 |
T |
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