View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_56 (Length: 284)
Name: NF17897_low_56
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 38003305 - 38003059
Alignment:
| Q |
16 |
ttatttatatggacattccaagattgatcagtggaacaagataccaggtgctagcaagatnnnnnnnncacacatggtttggagaaaacagaggctatgt |
115 |
Q |
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| T |
38003305 |
ttatttatatggacattccaagattgatcagtggaacaagataccaggagctagcaagataaaaaa---acacatggtttggagaaaacagaggctatgt |
38003209 |
T |
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| Q |
116 |
ctagtggttttggagataaatnnnnnnnnnnnnnnnngaatgtgacataatcatggaataccatttactctacgttggttccactttgtcgttactttca |
215 |
Q |
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| T |
38003208 |
ctagtggttttggagataaataaaagaaaaaacaaaagaatgtgacataatcatggaataccatttactctacgttggttccactttgtcgttactttca |
38003109 |
T |
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| Q |
216 |
cagctagataaataagaaagatatttgaccagcatgccttatcatctaacacat |
269 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
38003108 |
cagctag----ataagtaagatatttgagcagcatgccttatcatctaacacat |
38003059 |
T |
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