View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_59 (Length: 281)
Name: NF17897_low_59
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33246945 - 33246692
Alignment:
| Q |
1 |
aaactcgaatctttttaatggaatggagaaactcaccacaaatgtagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtt |
100 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33246945 |
aaactggaatcatttcaatggaatggagaaactcaccacagttgcagctggacaccaatgcttcaaatcaaggcgtcttccactatttatggagattgtt |
33246846 |
T |
|
| Q |
101 |
tatagagatatgtttgaaagttgaaaagtgtttttactttatgttagtctgcatttgcattcctttgcagctgtatagtgcttaatttcctgagnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | | ||||||||||||||||| |||| |
|
|
| T |
33246845 |
tatagagatatgtttgaaagttgaaaagtgtctttactttatgttagtctgcatttgcattcatttccggttgtatagtgcttaatttactga-aaaaca |
33246747 |
T |
|
| Q |
201 |
nntagattttaagtctcacttatcatcaagcattaaatgcaaagcaaacctgctg |
255 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33246746 |
aatagcttttaagtctcacttatcatcaagcattaaatgcaaagcaaacctgctg |
33246692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 20643569 - 20643402
Alignment:
| Q |
1 |
aaactcgaatctttttaatggaatggagaaactcaccacaaatgtagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtt |
100 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20643569 |
aaactggaatctttttaatagaatggagaaactcaccacaaatgcagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtt |
20643470 |
T |
|
| Q |
101 |
tatagagatatgtttgaaagttgaaaagtgtttttactttatgttagtctgcatttgcattcctttgc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20643469 |
tatagagatatgtttgaaagttgaaaagtgtttttactttatgttagtctgcatttgcattcctttgc |
20643402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 20643388 - 20643333
Alignment:
| Q |
207 |
ttttaagtctcacttatcatcaagcattaaatgcaaagcaaacctgctgtcataat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20643388 |
ttttaagtctcacttatcatcaagcattaaatgcaaagcaaacctgctgtcataat |
20643333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 29373010 - 29373196
Alignment:
| Q |
7 |
gaatctttttaatggaatggagaaactcaccacaaatgtagttggacaccaatgcttcaaagcaaggcgtcttccactatttatggagattgtt--tata |
104 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
29373010 |
gaatctttttaatggaatggaaaaacccaccacaaatgcagttggacagcaatgcttcaaagcaaggcgtcatccattatttatggagattgtttatata |
29373109 |
T |
|
| Q |
105 |
gagatatgttt--gaaagttgaaaagtg-tttttactttatgttagtctgcatttgcattcctttgcagctgtatagtgcttaattt |
188 |
Q |
| |
|
||||||||| | | ||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| | |||||||||| |
|
|
| T |
29373110 |
gagatatgtctccggaagttgaaaagtgttttttactttatgttaggctgcatttgcattcctttctaactgtaaaatgcttaattt |
29373196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University