View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_61 (Length: 279)
Name: NF17897_low_61
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 31950916 - 31951153
Alignment:
| Q |
22 |
aaaaagctgatatagagatataataaaagctcacaaaacatagttttaaaacattggttgcatagctcagcatatagaaattactcaatgcacttaacca |
121 |
Q |
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| T |
31950916 |
aaaaagctgatatagagatataataaaagctcacaaaacatagttttaaaacattggttgcatagctcagtatatagaaattactcaatgtacttaacca |
31951015 |
T |
|
| Q |
122 |
cattcaagagttctaaaactcaaccacgcaacttcattggtcatttgcaactaagttgttttaacaaaattcgaagagacacacacattggtactgacct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951016 |
cattcaagagttctaaaactcaaccacgcaacttcattggtcatttgcaactaagttgttttaacaaaattcgaagagacacacacattggtactgacct |
31951115 |
T |
|
| Q |
222 |
gaattaagacatgaaaaaaccaaacattggtactgacc |
259 |
Q |
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| T |
31951116 |
gaattaagacatgagaaaaccaaacattggaactgacc |
31951153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 55319774 - 55320014
Alignment:
| Q |
22 |
aaaaagctgatatagagatataataaaagctcacaaaacatagttttaaaacattggttgcatagctcagcatatagaaattactcaatgcacttaacca |
121 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |
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| T |
55319774 |
aaaaagctgatttagagatagaataaaagctaacaaaacatagttttaaaacattggttgcagatctcagcatatagaaattactcaatgtacttaacca |
55319873 |
T |
|
| Q |
122 |
cattcaagagttctaaaactcaaccacgcaacttcattggtcatttgcaactaagttgttttaacaaaattcgaagagacacacacattggtactgacct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55319874 |
cattcaagagttctaaaactcaaccacgcaacttcattggtcatttgcaactaagttgttttaacaaaattcgaagagacacacacattggtaccgacct |
55319973 |
T |
|
| Q |
222 |
gaattaagacatgaaaaaaccaaacattggtactgacctac |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
55319974 |
gaattaagacatgaaaaaaccaaacattggtactgacctac |
55320014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 20632532 - 20632400
Alignment:
| Q |
43 |
aataaaagctcacaaaacatagttttaaaacattggttgcatagctcagcatatagaaattactcaatgcacttaaccacattcaagagttctaaaactc |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
20632532 |
aataaaagctcacaaaacatagttttaaaacattggttgcatagctcagcatatagaaattactcaatgtactaaaccatattcaagagttctaaaactc |
20632433 |
T |
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| Q |
143 |
aaccacgcaacttcattggtcatttgcaactaa |
175 |
Q |
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| T |
20632432 |
aaccacgcaacttcattggtcatttgcaactaa |
20632400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 2778642 - 2778403
Alignment:
| Q |
23 |
aaaagctgatatagagatataataaaagctcacaaaacatagttttaaaacattggttgcatagctcagcatatagaaattactcaatgcacttaaccac |
122 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||| || |||||| |
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| T |
2778642 |
aaaagctgatatcgagatcgaataaaagctcacaaaacatagtataaaaacattggatgcatagctcagcaaatagaaattactcaatgtacaaaaccac |
2778543 |
T |
|
| Q |
123 |
attcaagagttctaaaactcaaccacgcaacttcattggtcatttgcaactaagttgttttaacaaaattcgaagagacacacacattggtactgacctg |
222 |
Q |
| |
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||||||| || ||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
2778542 |
attcaagggtactaaaactcgaccacgcaacttcattggtcattagcaacaaagtttttttaacaaaattcaaagagacacagacattggtactgacctg |
2778443 |
T |
|
| Q |
223 |
aattaagacatgaaaaaaccaaacattggtactgacctac |
262 |
Q |
| |
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|| ||||||| || |||||||||||||||||||||||||| |
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| T |
2778442 |
aagtaagacaggagaaaaccaaacattggtactgacctac |
2778403 |
T |
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