View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_62 (Length: 278)

Name: NF17897_low_62
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_62
NF17897_low_62
[»] chr2 (2 HSPs)
chr2 (1-278)||(2045034-2045310)
chr2 (71-148)||(2042059-2042136)
[»] chr6 (2 HSPs)
chr6 (179-265)||(2732936-2733024)
chr6 (221-250)||(739716-739745)
[»] chr7 (2 HSPs)
chr7 (177-234)||(25268816-25268875)
chr7 (175-238)||(2219525-2219590)
[»] chr1 (2 HSPs)
chr1 (177-269)||(7347691-7347785)
chr1 (175-245)||(15955889-15955961)
[»] chr8 (1 HSPs)
chr8 (195-250)||(30560104-30560162)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 2045310 - 2045034
Alignment:
Q  1 aggaaatgaaacacgtgtcatgcactcaatttccttctgcactctacgagcatgtccttgtaaaactggtacttgctaatctcattttcattgctattaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2045310 aggaaatgaaacacgtttcatgcactcaatttccttctgcactctacgagcatgtccttgtaaaactggcacttgctaatctcattttcattgctattaa 2045211  T
Q  101 tgcactgcaaccaaaggaacaggttcactataagaaatatttcttaaatagaatgcaagtacaaaagcaattttgtagaatttgaacacatcgttattgt 200  Q
    ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2045210 tgcactgcaaccaaaagaacagattcactataagaaatatt-cttaaatagaatgcaagtacaaaagcaattttgtagaatttgaacacatcgttattgt 2045112  T
Q  201 tttgttatacactatttagtaaaatattgtcaaatagcagctatagtggctctaaaatactattgcgtagtcaaattt 278  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2045111 tttgttatacactatttagtaaaatattatcaaatagcagctatagtggctctaaaatactattgcgtagtcaaattt 2045034  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 2042136 - 2042059
Alignment:
Q  71 acttgctaatctcattttcattgctattaatgcactgcaaccaaaggaacaggttcactataagaaatatttcttaaa 148  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| ||||  | ||||||||||||||||    
T  2042136 acttgctgatctcattttcattgctgttaatgcactgaaaccaaatgaacaggatcaccttgagaaatatttcttaaa 2042059  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 2732936 - 2733024
Alignment:
Q  179 aatttgaacacatcgttattgttttgttatacactatttagta--aaatattgtcaaatagcagctatagtggctctaaaatactattg 265  Q
    |||||||||| |||| ||||||||||  |||  ||||||||||  |||| |||||||||||||||||||| ||| ||| ||||||||||    
T  2732936 aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctatagaggcgctataatactattg 2733024  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 739716 - 739745
Alignment:
Q  221 aaaatattgtcaaatagcagctatagtggc 250  Q
    ||||||||||||||||||||||||||||||    
T  739716 aaaatattgtcaaatagcagctatagtggc 739745  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 25268816 - 25268875
Alignment:
Q  177 agaatttgaacacatcgttattgttttgttatacactatttag--taaaatattgtcaaa 234  Q
    |||||||||||| |||||||||||| || ||||||||||||||  |||||||||||||||    
T  25268816 agaatttgaacaaatcgttattgttctgctatacactatttagtataaaatattgtcaaa 25268875  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 2219590 - 2219525
Alignment:
Q  175 gtagaatttgaacacatcgttattgttttgttatacactatttagt--aaaatattgtcaaatagc 238  Q
    |||||||||||||| |||||||||||| | | |||  |||||||||  ||||||||||||||||||    
T  2219590 gtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaatattgtcaaatagc 2219525  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 7347691 - 7347785
Alignment:
Q  177 agaatttgaacacatcgttattgttttgttatacactatttagt--aaaatattgtcaaatagcagctatagtggctctaaaatactattgcgta 269  Q
    |||||||||||| || | ||||||||||  ||||||||||||||  |||||||||| ||||||| ||||||| ||| ||| | |||| |||||||    
T  7347691 agaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggctatagaggcgctatagtactgttgcgta 7347785  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 15955889 - 15955961
Alignment:
Q  175 gtagaatttgaacacatcgttattgttttgttatacactatttag--taaaatattgtcaaatagcagctata 245  Q
    |||||||||||||| |||||| ||||| ||| |||||||||||||   ||||| ||||||||||||| |||||    
T  15955889 gtagaatttgaacaaatcgttcttgttatgtgatacactatttaggacaaaatgttgtcaaatagcatctata 15955961  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 30560104 - 30560162
Alignment:
Q  195 tattgttttgttatacactatttagt---aaaatattgtcaaatagcagctatagtggc 250  Q
    ||||||||||  ||||||||||||||   ||||| ||||||||| ||||||||||||||    
T  30560104 tattgttttgcgatacactatttagtaaaaaaatgttgtcaaattgcagctatagtggc 30560162  T

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