View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_64 (Length: 272)
Name: NF17897_low_64
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 26489457 - 26489704
Alignment:
| Q |
11 |
cataggttttaaatttaattagtttttcttcgtgtaagcattccttttaagagcttagacttgattgacaaacacttgccttgtacgcaattttcagtca |
110 |
Q |
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| T |
26489457 |
cataggttttaaatttaattagtttttcttcgtgtaagcattccttttaagagcttagacttgattgacaaacacttgccttgtacagaattttcagtca |
26489556 |
T |
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| Q |
111 |
tataatgagaatggatgaaatttggaaatatgcatgtaccatatagttgaaactttagatggcctcgacaaattgttagactaatcaccaacccattctt |
210 |
Q |
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| T |
26489557 |
tataatgagaatggatgaaatttggaaatatgcatgtaccatatagttgaaactttagatggcctccgcaaattattagactaatcaccaacccattctt |
26489656 |
T |
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| Q |
211 |
tcctcatttgattccacgttatctcagctgcacgaaaagaagaatatg |
258 |
Q |
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| T |
26489657 |
tcctcatttgattccacgttatctcagctgcacgaaaagaagaatatg |
26489704 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 41259515 - 41259636
Alignment:
| Q |
121 |
atggatgaaatttggaaatatgcatgtaccatatagttgaaactttagatggcctcgacaaattgttagactaatcaccaacccattctttcctcatttg |
220 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||| ||| || ||| ||||| |||| |||||||||||||||||||||| |||| |
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| T |
41259515 |
atggatgaaaatcagaaatatgcatgtaccatatagttgaaactctagggggtctctgtgctttgtttgactgatcaccaacccattctttcctcttttg |
41259614 |
T |
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| Q |
221 |
attccacgttatctcagctgca |
242 |
Q |
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| T |
41259615 |
attccacgctatctcagctgca |
41259636 |
T |
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