View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_66 (Length: 262)
Name: NF17897_low_66
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_66 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 27443400 - 27443649
Alignment:
| Q |
1 |
atttagctaagtaaatttttcttcttgcgcttaataaattcatttataattctaatatgagtgattttgtatttctttatgcagttgttggaggagctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443400 |
atttagctaagtaaatttttcttcttgcgcttaataaattcatttataattctaatatgagtgattttgtatttctttatgcagttgttggaggagctaa |
27443499 |
T |
|
| Q |
101 |
ggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcgacaacgggttttgagttaggacct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||| ||| || |
|
|
| T |
27443500 |
ggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatct |
27443599 |
T |
|
| Q |
201 |
ggagcaacaattgcggtggatcttccatcaccatggtcgggtagattttg |
250 |
Q |
| |
|
|||| || ||| | ||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
27443600 |
ggagttactatttcagtggaccttccatcaccatggtctggtcgattttg |
27443649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 27208053 - 27207881
Alignment:
| Q |
78 |
tatgcagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
177 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27208053 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
27207954 |
T |
|
| Q |
178 |
caacgggttttgagttaggacctggagcaacaattgcggtggatcttccatcaccatggtcgggtagattttg |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
27207953 |
caacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttg |
27207881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 27433133 - 27432961
Alignment:
| Q |
78 |
tatgcagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
177 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
27433133 |
tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaagcctcagctatcaa |
27433034 |
T |
|
| Q |
178 |
caacgggttttgagttaggacctggagcaacaattgcggtggatcttccatcaccatggtcgggtagattttg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
27433033 |
caacgggttttgagttaggacctggagcaacaattgaggtggaccttccatcaccatggtcgggtcgattttg |
27432961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 27221398 - 27221214
Alignment:
| Q |
66 |
tttgtatttctttatgcagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac |
165 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27221398 |
tttgtatttgtatatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac |
27221299 |
T |
|
| Q |
166 |
ctcagctatcgacaacgggttttgagttaggacctggagcaacaattgcggtggatcttccatcaccatggtcgggtagattttg |
250 |
Q |
| |
|
|||||||||| || || ||||| ||||| ||| |||||| || ||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27221298 |
ctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtcgggtagattttg |
27221214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 27215436 - 27215252
Alignment:
| Q |
66 |
tttgtatttctttatgcagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaac |
165 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27215436 |
tttgtatttgtatatgcagtggttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaac |
27215337 |
T |
|
| Q |
166 |
ctcagctatcgacaacgggttttgagttaggacctggagcaacaattgcggtggatcttccatcaccatggtcgggtagattttg |
250 |
Q |
| |
|
|||||||||| || || ||||| ||||| ||| |||||| || ||| | ||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
27215336 |
ctcagctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttg |
27215252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 27389347 - 27389217
Alignment:
| Q |
78 |
tatgcagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
177 |
Q |
| |
|
||||||| || | ||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
27389347 |
tatgcagctgctagaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaacctcagctatcaa |
27389248 |
T |
|
| Q |
178 |
caacgggttttgagttaggacctggagcaac |
208 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |
|
|
| T |
27389247 |
caacaggtttcgagttaggacctggagcaac |
27389217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 27455277 - 27455186
Alignment:
| Q |
82 |
cagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctat |
174 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| ||||||||| | |||||| | || |||||||||| |||| |||||||||||||||| |
|
|
| T |
27455277 |
cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagaga-caaaaacctcagctat |
27455186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 27410303 - 27410183
Alignment:
| Q |
78 |
tatgcagttgttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
177 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||| || ||| || |||| ||||| |||| | |
|
|
| T |
27410303 |
tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaacctttactacagctcaaacccctcaattatcaa |
27410204 |
T |
|
| Q |
178 |
caacgggttttgagttaggac |
198 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
27410203 |
caacaggttttgagttgggac |
27410183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 27415763 - 27415821
Alignment:
| Q |
87 |
gttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac |
145 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
27415763 |
gttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac |
27415821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University