View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_69 (Length: 250)
Name: NF17897_low_69
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 33858353 - 33858568
Alignment:
| Q |
16 |
aaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatagattccgtagcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33858353 |
aaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatagattccgtagcg |
33858452 |
T |
|
| Q |
116 |
gtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggttaataataccttattatatctatatttatttctctgtggtctatccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
33858453 |
gtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggctaataataccttagtatatctatatttatttctctgtggcctatccc |
33858552 |
T |
|
| Q |
216 |
atgaatatgatgtaga |
231 |
Q |
| |
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|||||||||||||||| |
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| T |
33858553 |
atgaatatgatgtaga |
33858568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 33922570 - 33922355
Alignment:
| Q |
16 |
aaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatagattccgtagcg |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922570 |
aaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatagattccgtagcg |
33922471 |
T |
|
| Q |
116 |
gtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggttaataataccttattatatctatatttatttctctgtggtctatccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
33922470 |
gtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggctaataataccttagtatatctatatttatttctctgtggcctatccc |
33922371 |
T |
|
| Q |
216 |
atgaatatgatgtaga |
231 |
Q |
| |
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|||||||||||||||| |
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| T |
33922370 |
atgaatatgatgtaga |
33922355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 33185206 - 33185295
Alignment:
| Q |
16 |
aaaatttcacaagtcttaatcaaaacatt-aatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagataga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||| | ||||||||||| |
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| T |
33185206 |
aaaatttcacaagtcttaatcaaaacattaaatccaaaagaccaaagaacagaggaact-ataaggagaacaaagaatagaggaagataga |
33185295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 30213167 - 30213242
Alignment:
| Q |
16 |
aaaatttcacaagtcttaatcaaaacattaa-tccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaa |
91 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||| ||||| ||||||||||| ||||||| ||||||||| |
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| T |
30213167 |
aaaatttcacaagtcttagttaaaacattaaatccaaaagaacaaaggacagaggaact-aaaaagaaaacaaagaa |
30213242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 43854034 - 43853990
Alignment:
| Q |
61 |
gaacagaggaactaaaaaagagaacaaagaacataggaagatagat |
106 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
43854034 |
gaaccgaggaactaaaaa-gagaacaaagaacagaggaagatagat |
43853990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 43631698 - 43631778
Alignment:
| Q |
25 |
caagtcttaatcaaaacatt-aatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaac-ataggaagatag |
104 |
Q |
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||||||| |||||||||||| ||||||||||| |||||||| | ||| | |||||||||||||||||| | |||||||||| |
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| T |
43631698 |
caagtctcaatcaaaacattaaatccaaaagaaaaaagaacatatgaaat-aaaaagagaacaaagaactagaggaagatag |
43631778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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