View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_7 (Length: 595)
Name: NF17897_low_7
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 40886326 - 40886894
Alignment:
| Q |
18 |
atattttttatggagaacaaagagaataatacatgaagaaggtataaatagttgtgcgagcttggtggtaaggtggagggagaggatcatgctaggattg |
117 |
Q |
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| T |
40886326 |
atattttttatggagaacaaagagaataatacatgaagaaggtataaatagttgtgcgagcttggtggtaaggtggagggagaggatcatgctaggattg |
40886425 |
T |
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| Q |
118 |
attcttgcaatttgtgacacacnnnnnnnnctacttccttttgcatgattttaggttatcgagtattacgattagagaagtttttcctagattgtttgct |
217 |
Q |
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| T |
40886426 |
attcttgcaatttgtgacaca-aaaaaaaactacttccttttgcatgattttaggttatcgagtattacgattagagaagtttttcctagattgtttgct |
40886524 |
T |
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| Q |
218 |
atttcgcttcaaaaatcgt---gtagtatttatgagatgagaacatggtggagaggtcttggagttgggatttgaaatggcggagaaatttctttgaatg |
314 |
Q |
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| T |
40886525 |
atgtcgcttcaaaaatcatattgtagtatttatgagatgagaacatggtggagaggtcttggagttgggatttgaaatggcggagaaatttctttgaatg |
40886624 |
T |
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| Q |
315 |
gaaaaaacatatatttgatgatctttgggcttgattgggtaatgctaataagtggatttgaatttttgatcaatttagtattttgttgatcaagtactaa |
414 |
Q |
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| T |
40886625 |
gaaaaaacatatatttgatgatctttgggcttgattgggtaatgctaataagtggatttgagtttttgatcaatttagtattttgttgatcaagtactaa |
40886724 |
T |
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| Q |
415 |
ttatacttctttcataatatgaatgatttttgaaccctcttctttatcttcttttttaggaggtattgtttgcagtttggttgatcaggtac---taatt |
511 |
Q |
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| T |
40886725 |
ttatacttctttcataatatgaatgatttttgaaccctcttctttatcttcttttttaggaggtattgtttgcagtttggttgatcaggtactaataatt |
40886824 |
T |
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| Q |
512 |
atacttctctcgttctacttaataaatttaattttgcagttccaagaaaataccatgcaaccaccctatg |
581 |
Q |
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| T |
40886825 |
atacttctctcattctacttaataaatttaattttgcagttcgaagaaaataccatgcaaccaccctatg |
40886894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 21418476 - 21418549
Alignment:
| Q |
269 |
ggtcttggagttgggatttgaaatggcggagaaatttctttgaatggaaaaaacatatatttgatgatctttggg |
343 |
Q |
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| T |
21418476 |
ggtcttggagttgggatttgaagtggcggaggaatctttttgaatgggaaaaa-atttatttgaagatctttggg |
21418549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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