View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_70 (Length: 250)
Name: NF17897_low_70
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_70 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 30098679 - 30098441
Alignment:
| Q |
2 |
accagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaaaggtatgagtt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30098679 |
accagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtatgccatagtccacttggagaatctagtgaaagaaattcaaaggtatgagtt |
30098580 |
T |
|
| Q |
102 |
gtgtcaatggtagctgttctatcttgatatgctgcaacaaagccatcaatgttcttaagaatctctaactcatttgaagataacactgcactaaagccat |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30098579 |
gtgtcaatggtagcagttctatcttgatatgctgaaacaaagccatcaatgttcttaagaatctctaactcatttgaagataacactgcactaaagccat |
30098480 |
T |
|
| Q |
202 |
acatggcatgatcataggtgtacaccagtttcttctgtg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30098479 |
acatggcatgatcataggtgtacaccagtttcttctgtg |
30098441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30088228 - 30088467
Alignment:
| Q |
1 |
caccagtatcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaaaggtatgagt |
100 |
Q |
| |
|
|||||| ||| ||||||||||||| || || |||||||||| ||||| || |||||| ||| ||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
30088228 |
caccagaatctataacaccaacaatgatgtcatctccaaaatttgaagcatgccatagaccacttggagaatctagggagagaaattcaaaggtgtgagt |
30088327 |
T |
|
| Q |
101 |
tgtgtcaatggtagctgttctatcttgatatgctgcaacaaagccatcaatgttcttaagaatctctaactcatttgaagataacactgcactaaagcca |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
30088328 |
tgtgtcaatggttgctgttctatcttgatatgctgaaacaaagccatcaatgttcttaataatctctaactcatttgaagataacattgcacaaaatcca |
30088427 |
T |
|
| Q |
201 |
tacatggcatgatcataggtgtacaccagtttcttctgtg |
240 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
30088428 |
tacatggcattatcataggtgtacactagtttcttctgtg |
30088467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 30092194 - 30092425
Alignment:
| Q |
9 |
tcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaaaggtatgagttgtgtcaa |
108 |
Q |
| |
|
||||||||||||| || || ||||||||| |||| ||||| || |||||| ||| ||||||||||||| || |||||||||||||| ||||||||||| | |
|
|
| T |
30092194 |
tcaataacaccaataatgatatcgtctccgaaatttgaagcatgccatagaccacttggagaatctagggagagaaattcaaaggtgtgagttgtgtcca |
30092293 |
T |
|
| Q |
109 |
tggtagctgttctatcttgatatgctgcaacaaagccatcaatgttcttaagaatctctaactcatttgaagataacactgcactaaagccatacatggc |
208 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30092294 |
tggttgctgttctgtcttgatatgctgcaacaaagccatcagtgttgttaagagtctctaactcatttgaagataacaatgcactaaatccatacatggc |
30092393 |
T |
|
| Q |
209 |
atgatcataggtgtacaccagtttcttctgtg |
240 |
Q |
| |
|
|| |||||||||||| || |||| |||||||| |
|
|
| T |
30092394 |
attatcataggtgtatactagttgcttctgtg |
30092425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 35171823 - 35172049
Alignment:
| Q |
9 |
tcaataacaccaacaacgacatcgtctccaaaatctgaagtataccatagtccatttggagaatctagtgaaagaaattcaaaggtatgagttgtgtcaa |
108 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||| ||| | || ||||||||| || | || |||| ||||||||| |||||||| || |||||||| | |
|
|
| T |
35171823 |
tcaataacaccaacaataacattttctcctaaatttgatgcattccatagtcctttggaagggtctaatgaaagaaactcaaaggtgtgtgttgtgtcta |
35171922 |
T |
|
| Q |
109 |
tggtagctgttctatcttgatatgctgcaacaaagccatcaatgttcttaagaatctctaactcatttgaagataacactgcactaaagccatacatggc |
208 |
Q |
| |
|
| || |||||||| || | || |||| ||||| |||| | || || || | |||||||| |||| ||||| |||||||| || |||| |||||| |
|
|
| T |
35171923 |
ttgttgctgttctgtcagggtaagctgtgacaaaaccatgagattttttgaggttgtctaactcttttggtgataagactgcactgaatccatgcatggc |
35172022 |
T |
|
| Q |
209 |
atgatcataggtgtacaccagtttctt |
235 |
Q |
| |
|
||||| ||||||||||||| |||||| |
|
|
| T |
35172023 |
atgattgtaggtgtacaccaatttctt |
35172049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University