View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_73 (Length: 243)
Name: NF17897_low_73
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 3654645 - 3654861
Alignment:
| Q |
11 |
cataggaaaagacaaatgggtccaagaatctgacatcaaaaaccttaaatatcttcaagccattatcaaagagacacttcgtttatacccaccagcaccc |
110 |
Q |
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| T |
3654645 |
cataggaaaagacaaatgggtccaagaatctgacatcaaaaaccttaaatatcttcaagccattatcaaagagacacttcgtttatacccaccagcaccc |
3654744 |
T |
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| Q |
111 |
ttaacaggaataagagaagccactgatgattgccacgtggcaggctacaaagtcaccaaaggcactcgtttgcttattaacctatggaaattgcaaaggg |
210 |
Q |
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| T |
3654745 |
ttaacaggaataagagaagccactgatgattgccacgtggcaggctacaaagtcaccaaaggcactcgtttgtttattaacctatggaaattgcaaaggg |
3654844 |
T |
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| Q |
211 |
acccactagtatggtcc |
227 |
Q |
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| T |
3654845 |
acccactagtatggtcc |
3654861 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 35026372 - 35026421
Alignment:
| Q |
60 |
tatcttcaagccattatcaaagagacacttcgtttatacccaccagcacc |
109 |
Q |
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| T |
35026372 |
tatcttcaagccattatcaaagaaacattgcgtctatacccaccagcacc |
35026421 |
T |
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