View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_75 (Length: 240)
Name: NF17897_low_75
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51318950 - 51318734
Alignment:
| Q |
1 |
taaaggaagatttggatcacctcatataaatcaagatcttctaattcacagtgatgagtcatggtttaaggtacatgattaccatggcattnnnnnnnnn |
100 |
Q |
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| T |
51318950 |
taaaggaagatttggatcacctcatatacatcaagatcttctaattcacagtgatgagtcatggtttaaggtacatgattaccatggcatttatata--- |
51318854 |
T |
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| Q |
101 |
nnnggttttggataagatagtttgtttattaatattgctttaattttaattacttgcagaaagtggagaagatagtacctcttacattaaaaagcatgga |
200 |
Q |
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| T |
51318853 |
---ggttttggataagatagtttgtttattaatattgctttaattttaattacttgcagaaagtggagaagatagtacctcccacattaaaaagcatgga |
51318757 |
T |
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| Q |
201 |
aaataaaaatggtatgaccccaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
51318756 |
aaataaaaatggtatgaccccaa |
51318734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 51342419 - 51342339
Alignment:
| Q |
144 |
ttttaattacttgcagaaagtggagaagatagtacctcttacattaaaaagcatggaaaataaaaatggtatgaccccaat |
224 |
Q |
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|||||| | ||||||| |||||||||||||| |||| |||||| |||| |||| ||||| | |||||||||||||||| |
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| T |
51342419 |
ttttaactgcttgcaggaagtggagaagataactcctcctacattcaaaaacatgaaaaatcatgatggtatgaccccaat |
51342339 |
T |
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