View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_76 (Length: 238)
Name: NF17897_low_76
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 4278395 - 4278554
Alignment:
| Q |
17 |
aggttgtatttggaaaatacgcaaagatcatccttctctttatagtccaatcacaaataagtatgtacaatatgactatgagtaannnnnnnnnnnnnnn |
116 |
Q |
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| T |
4278395 |
aggttgtatttggaaaatacgcaaagatcatccctctctttatagtccaatcacaaataagtatgtacaatatgactatgagtaa-tttttttttttttt |
4278493 |
T |
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| Q |
117 |
nnnnatagaggaactatatgtaaagttaatttgacaatttgtctaacaaaatatttttata |
177 |
Q |
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| T |
4278494 |
ttttatagaggaactatatgtaaagttaatttgacaatttgtctaacaaaatatttttata |
4278554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 4275052 - 4275260
Alignment:
| Q |
17 |
aggttgtatttggaaaatacgcaaagatcatccttctctttatagtccaatcacaaataagtatgtacaatatgactatgagtaannnnnnnnnnnnnnn |
116 |
Q |
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| T |
4275052 |
aggttgtatttggaaaataggaaaagatcatcccactctttataatccaatcacagataagtatatataatatgactatgagtaattttttt-------- |
4275143 |
T |
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| Q |
117 |
nnnnatagaggaactatatgtaaagttaatttgacaatttgtctaacaaaatatttttatacggttgctannnnnnnaatagtaatttttcctctatctt |
216 |
Q |
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| T |
4275144 |
-----tagaggaactatatgtaaagttaatttaacaacttgtctaaccaaatatttttatacggttgctattttaataataatgatttttcctctatctt |
4275238 |
T |
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| Q |
217 |
ataatcaaagtgacatttgatt |
238 |
Q |
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| T |
4275239 |
ataaccaaagcaacatttgatt |
4275260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 4278552 - 4278595
Alignment:
| Q |
195 |
atagtaatttttcctctatcttataatcaaagtgacatttgatt |
238 |
Q |
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| T |
4278552 |
atagtaatttttcctctatcttataatcaaagtgacatttgatt |
4278595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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