View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_77 (Length: 237)
Name: NF17897_low_77
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 5480223 - 5480004
Alignment:
| Q |
2 |
ctgcactagtcttgttaaaatcggaaacaatgcctacagcggacccactactaaacacgtcattatcattttcatctattctatcaccttccacgtcatc |
101 |
Q |
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| T |
5480223 |
ctgcactagtcttgttaaaatcggaaacaattcctacatcggacccactactaaacacgtcattatcattttcatctattctatcaccttccacgtcatc |
5480124 |
T |
|
| Q |
102 |
attcccacgaccaagagtgtgcggaacagcctgaggctcacgcttttccgcactctcttgtaactgcaaggcaaactccaacatccaaacaacatcattc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5480123 |
attcccacgaccaagagtgtgcggaacagcctgaggctcacgcttttccgcactctcttgtaactgcaaggcaaactccaacatccaaacaacatcattc |
5480024 |
T |
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| Q |
202 |
atcgacggtctcatggttcc |
221 |
Q |
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|||||||||||||||||||| |
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| T |
5480023 |
atcgacggtctcatggttcc |
5480004 |
T |
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