View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_8 (Length: 590)

Name: NF17897_low_8
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_8
NF17897_low_8
[»] chr4 (7 HSPs)
chr4 (143-574)||(53429994-53430425)
chr4 (13-143)||(53427503-53427633)
chr4 (420-473)||(1686466-1686519)
chr4 (222-307)||(3560932-3561017)
chr4 (253-310)||(3565752-3565809)
chr4 (253-318)||(53774840-53774905)
chr4 (420-468)||(3561139-3561187)
[»] chr7 (13 HSPs)
chr7 (222-324)||(29430975-29431077)
chr7 (224-318)||(29921969-29922063)
chr7 (223-318)||(29454078-29454173)
chr7 (420-473)||(29881092-29881145)
chr7 (223-310)||(29867244-29867331)
chr7 (223-310)||(29874519-29874606)
chr7 (246-307)||(29881267-29881328)
chr7 (421-473)||(29867075-29867127)
chr7 (416-471)||(29454280-29454335)
chr7 (231-317)||(660830-660916)
chr7 (427-473)||(29859290-29859336)
chr7 (245-318)||(29106814-29106887)
chr7 (167-212)||(29476226-29476271)
[»] chr1 (5 HSPs)
chr1 (246-315)||(4014963-4015032)
chr1 (253-318)||(4570927-4570992)
chr1 (222-318)||(21855357-21855453)
chr1 (246-318)||(10218985-10219057)
chr1 (327-471)||(4366583-4366727)
[»] chr3 (2 HSPs)
chr3 (222-310)||(3625742-3625830)
chr3 (420-468)||(3625575-3625623)
[»] chr5 (1 HSPs)
chr5 (222-318)||(24330873-24330969)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 143 - 574
Target Start/End: Original strand, 53429994 - 53430425
Alignment:
Q  143 gttttcttgacgacttctaagtagcagtgtatcagcatcctcaaaaagaagcaccggcaataattgaaaactaggtgctaagtcatagtctacttgaaga 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53429994 gttttcttgacgacttctaagtagcagtgtatcagcatcctcaaaaagaagcaccggcaataattgaaaactaggtgctaagtcatagtctacttgaaga 53430093  T
Q  243 tgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaataggtgtgctaagaaaaacaaagat 342  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53430094 tgttggtaactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaataggtgtgctaagaaaaacaaagac 53430193  T
Q  343 agccccctagcacaccaacaattggagctgcaggtggcaattcatcgaacccacaaggcagcttgtactggcggtacgtctcagtccccagatcaagtga 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53430194 agccccctagcacaccaacaattggagctgcaggtggcaattcatcgaacccacaaggcagcttgtactggcggtacgtctcagtccccagatcaagtga 53430293  T
Q  443 aacaataacaagttgttcaactgtaatatccactaaactataaccattgatgtcgtcgtgaatggctaaccaattaaaagtgccactacaatacacacca 542  Q
    || |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53430294 aaaaataacaagttgttcaactgtaatatcctcaaaactataaccattgatgtcgtcgtgaatggctaaccaattaaaagtgccactacaatacacacca 53430393  T
Q  543 ttggtagagcatccaccgttggcggggcaaag 574  Q
    |||||||||||||||||||||||| |||||||    
T  53430394 ttggtagagcatccaccgttggcgaggcaaag 53430425  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 53427503 - 53427633
Alignment:
Q  13 aagaatatataggattaaatatgaataatgtcgtgagtatagaaaaagactcgaaatcactatcgttggtctcttttcccataccacgtcaccaataata 112  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53427503 aagaaaatataggattaaatattaataatgtcgtgagtatagaaaaagactcgaaatcactatcgttggtctcttttcccataccacgtcaccaataata 53427602  T
Q  113 caaaaccaacacaagaccaaccaaaaatcag 143  Q
    |||||||||||||||||||||||||||||||    
T  53427603 caaaaccaacacaagaccaaccaaaaatcag 53427633  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 1686466 - 1686519
Alignment:
Q  420 gtctcagtccccagatcaagtgaaacaataacaagttgttcaactgtaatatcc 473  Q
    ||||||||||||| || |||||||||||||||||  |||||||| |||||||||    
T  1686466 gtctcagtccccaaattaagtgaaacaataacaatctgttcaacagtaatatcc 1686519  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 3560932 - 3561017
Alignment:
Q  222 aagtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgcca 307  Q
    |||||||| |||| ||||||||  || ||| |||||||||| |||||||||||||| || ||  ||||| |||| |||||||||||    
T  3560932 aagtcataatctaattgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgcca 3561017  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 3565809 - 3565752
Alignment:
Q  253 taattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatat 310  Q
    |||||||||| |||||||||||||| || ||  ||||| ||| |||||||||||||||    
T  3565809 taattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatat 3565752  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 53774905 - 53774840
Alignment:
Q  253 taattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    ||||||||||||||||||||||||| || ||  | ||| ||| |||||| |||||||| |||||||    
T  53774905 taattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaat 53774840  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 3561139 - 3561187
Alignment:
Q  420 gtctcagtccccagatcaagtgaaacaataacaagttgttcaactgtaa 468  Q
    |||||||| ||||||||||| |||||||||||||  || ||||||||||    
T  3561139 gtctcagttcccagatcaagcgaaacaataacaaactgctcaactgtaa 3561187  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 29430975 - 29431077
Alignment:
Q  222 aagtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaatagg 321  Q
    |||||||| |||| ||||||||  || ||| |||||||||||||||| ||||||||||| |  |||||| ||||| ||||| ||||||| ||||||||||    
T  29430975 aagtcataatctatttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaatagg 29431074  T
Q  322 tgt 324  Q
    |||    
T  29431075 tgt 29431077  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 29921969 - 29922063
Alignment:
Q  224 gtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    |||||| |||| | |||||| ||| ||| ||||| |||||||||||| ||||||||| ||  ||||| ||||||||||||||||||| |||||||    
T  29921969 gtcataatctattagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaat 29922063  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 29454078 - 29454173
Alignment:
Q  223 agtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    |||||| ||||| |||||||| ||| ||| ||||||||| |||||||||||||||||| ||  | ||| ||||| ||||| ||||||| |||||||    
T  29454078 agtcatggtctatttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 29881145 - 29881092
Alignment:
Q  420 gtctcagtccccagatcaagtgaaacaataacaagttgttcaactgtaatatcc 473  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||    
T  29881145 gtctcagtccccaaatcaagtgaaacaataacaaattggtcaacagtaatatcc 29881092  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 29867331 - 29867244
Alignment:
Q  223 agtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatat 310  Q
    ||||||| || | ||||||||  |||||| ||||| |||||||||||||||||||||| ||  ||||  |||||||||| ||||||||    
T  29867331 agtcataatcaatttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatat 29867244  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 29874606 - 29874519
Alignment:
Q  223 agtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatat 310  Q
    ||||||| || | |||||||| ||| ||| |||||||||| ||| ||||||||||||| ||  ||||| |||||||||| ||||||||    
T  29874606 agtcataatcaatttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatat 29874519  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 29881328 - 29881267
Alignment:
Q  246 tggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgcca 307  Q
    |||||| ||||| |||||||||||||||||||||| ||  ||||| |||||||||| |||||    
T  29881328 tggtaactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 29881267  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 29867127 - 29867075
Alignment:
Q  421 tctcagtccccagatcaagtgaaacaataacaagttgttcaactgtaatatcc 473  Q
    |||||||||||| ||||||||||||||||||||  || ||||| |||||||||    
T  29867127 tctcagtccccaaatcaagtgaaacaataacaaactggtcaacagtaatatcc 29867075  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 29454280 - 29454335
Alignment:
Q  416 gtacgtctcagtccccagatcaagtgaaacaataacaagttgttcaactgtaatat 471  Q
    ||||||||||||||||| ||||||||||| ||||||||  || |||||||| ||||    
T  29454280 gtacgtctcagtccccaaatcaagtgaaataataacaaactgctcaactgtgatat 29454335  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 660830 - 660916
Alignment:
Q  231 tctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaa 317  Q
    |||| ||||||||  || ||| ||||||||||||||||||||||||| || ||  | | | ||| ||||||||||||||| ||||||    
T  660830 tctatttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 473
Target Start/End: Complemental strand, 29859336 - 29859290
Alignment:
Q  427 tccccagatcaagtgaaacaataacaagttgttcaactgtaatatcc 473  Q
    |||||| |||||||||||||||||||| |||||| || |||||||||    
T  29859336 tccccaaatcaagtgaaacaataacaaattgttcgacagtaatatcc 29859290  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 29106887 - 29106814
Alignment:
Q  245 ttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    ||||||| |||||||||  | |||||||||||| || ||  ||||| ||||||||||||||||||  |||||||    
T  29106887 ttggtaactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 29476226 - 29476271
Alignment:
Q  167 cagtgtatcagcatcctcaaaaagaagcaccggcaataattgaaaa 212  Q
    ||||||||||||||||||| ||||||||| |||||  |||||||||    
T  29476226 cagtgtatcagcatcctcagaaagaagcagcggcaccaattgaaaa 29476271  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 4014963 - 4015032
Alignment:
Q  246 tggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaa 315  Q
    |||||| ||| |||||||||||||||||||||||| ||  ||||| ||||||||||||||||||| ||||    
T  4014963 tggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 4570992 - 4570927
Alignment:
Q  253 taattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    |||||||||| ||||||||||||||||| ||  ||||| |||||||||| |||||||| |||||||    
T  4570992 taattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 21855357 - 21855453
Alignment:
Q  222 aagtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    |||||||| |||| | ||||||  |||||| ||| |||||||| ||||||||||||||| ||  ||||| ||| |||||||| |||||| |||||||    
T  21855357 aagtcataatctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaat 21855453  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 10219057 - 10218985
Alignment:
Q  246 tggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    |||||| |||||||||| ||||||||||||||||| ||   |||| |||||||||| |||||||  |||||||    
T  10219057 tggtaactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 4366583 - 4366727
Alignment:
Q  327 taagaaaaacaaagatagccccctagcacaccaacaattggagctgcaggtggcaattcatcgaacccacaaggcagcttgtactggcggtacgtctcag 426  Q
    ||||||||||||||  || |||| | |||||||||  ||||  | | |||||||| ||| || || |||| |||||||  ||| ||   ||| ||||| |    
T  4366583 taagaaaaacaaaggcagtcccccaacacaccaactgttggttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctg 4366682  T
Q  427 tccccagatcaagtgaaacaataacaagttgttcaactgtaatat 471  Q
    | ||||||||||| ||||||||||||| ||| ||||| |||||||    
T  4366683 tacccagatcaagcgaaacaataacaaattgctcaacggtaatat 4366727  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 3625830 - 3625742
Alignment:
Q  222 aagtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatat 310  Q
    |||||||| |||| |||||||| ||| ||| |||||||||| |||||||||||||| || ||  ||||| |||||||||| ||||||||    
T  3625830 aagtcataatctaattgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatat 3625742  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 468
Target Start/End: Complemental strand, 3625623 - 3625575
Alignment:
Q  420 gtctcagtccccagatcaagtgaaacaataacaagttgttcaactgtaa 468  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||| ||||    
T  3625623 gtctcagtccccaaatcaagtgaaacaataacaaattgctcaacagtaa 3625575  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 24330873 - 24330969
Alignment:
Q  222 aagtcatagtctacttgaagatgttggtaattaattttaaggaattgagtccaagaatcatcggccccatatttcttcatctgccatatgacaaaat 318  Q
    |||||||| |||| | ||||||  |||||| ||| |||||||| ||||||||||||||| ||  ||||| ||| |||||||| |||||| |||||||    
T  24330873 aagtcataatctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaat 24330969  T

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