View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_80 (Length: 227)
Name: NF17897_low_80
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 34360898 - 34361085
Alignment:
| Q |
18 |
atggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnnnnnnnatagtttg |
117 |
Q |
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| T |
34360898 |
atggaggagactttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcattggatcctttttt-atagtttg |
34360996 |
T |
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| Q |
118 |
aaactgagaagttgcaactcttctcttttcctatctctatgtatacaatgcatgtttacttagttctgttcaagatgctagcatggact |
206 |
Q |
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| T |
34360997 |
aaagtgagaagttgcaactcttcccttttcctatctctatgtatacaatgcatgtttacttagctctgttcaagatgctagcatggact |
34361085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 5584688 - 5584814
Alignment:
| Q |
18 |
atggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnnnnnnnatagtttg |
117 |
Q |
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| T |
5584688 |
atggaggagactttatcctattattttagtatgaaggcttgagcatcttacttttgtgaatgaagcacttcctt-----ggtacctttttttatagtttg |
5584782 |
T |
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| Q |
118 |
aaactgagaagttgcaactcttctcttttcct |
149 |
Q |
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| T |
5584783 |
aaagtgagaagttgcaactcttctcctttcct |
5584814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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