View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_84 (Length: 221)
Name: NF17897_low_84
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 21097447 - 21097238
Alignment:
| Q |
1 |
gtaatgaagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097447 |
gtaatgaagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatctt |
21097348 |
T |
|
| Q |
101 |
gtaagaggttgacctggaaggagagtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097347 |
gtaagaggttgacctggaaggagagtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcat |
21097248 |
T |
|
| Q |
201 |
ttttgtgatg |
210 |
Q |
| |
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||||| |||| |
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|
| T |
21097247 |
ttttgagatg |
21097238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 21107065 - 21106857
Alignment:
| Q |
2 |
taatgaagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttg |
101 |
Q |
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||||||||||| |||| ||| ||||||||||| ||||| | |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
21107065 |
taatgaagaccaagaacatttgcatcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagctacaagctttgtatatcttg |
21106966 |
T |
|
| Q |
102 |
taagaggttgacctggaaggagagtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21106965 |
taagaggttgacctggaaggagagtatctgttggagagtcaaaactctgccacaaaattgtgattccttgaagctcacgcaacacaagatttccatcatc |
21106866 |
T |
|
| Q |
202 |
tttgtgatg |
210 |
Q |
| |
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|||| |||| |
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|
| T |
21106865 |
tttgagatg |
21106857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 21131789 - 21131962
Alignment:
| Q |
25 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
124 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||| || || |||||| ||||||||| |
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| T |
21131789 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggaga |
21131888 |
T |
|
| Q |
125 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatc |
198 |
Q |
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| T |
21131889 |
gtattggttgggaaatcatagctttgccacaaaatggtacttccttgaagctcacgtaacacaagattaccatc |
21131962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 18659951 - 18660124
Alignment:
| Q |
25 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
124 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| | ||| ||||||| ||||| ||| | ||||| || ||||||||| ||||||||| |
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| T |
18659951 |
atcatcaaagaaaaacttatagaagccagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattaggaaggaga |
18660050 |
T |
|
| Q |
125 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatc |
198 |
Q |
| |
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|||| |||||| | ||| | || |||||||| ||| | |||||||||||||||| || |||||||| ||||| |
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| T |
18660051 |
gtatttgttgggaaatcatagctttgccacaagatggtagttccttgaagctcacgtaatacaagattaccatc |
18660124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 21112829 - 21113002
Alignment:
| Q |
25 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
124 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||| | ||| ||||||| ||||| ||||||||||| || ||||||||| ||||||||| |
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| T |
21112829 |
atcatcaaagaacaacttataaaagccagaagaatgattactatggcttcttgaagaaacaaggtttgtatatctagtgagaggttgattaggaaggaga |
21112928 |
T |
|
| Q |
125 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatc |
198 |
Q |
| |
|
|||| ||| || | ||| | || |||||||| ||| | ||||||||||||||| ||||||||||| ||||| |
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| T |
21112929 |
gtatttgtcgggaaatcatagctttgccacaagatggtaggtccttgaagctcacgtaacacaagattcccatc |
21113002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 21124223 - 21124399
Alignment:
| Q |
25 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgt---atatcttgtaagaggttgacctggaagg |
121 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| | ||| ||||| ||||| || ||||||||| |||||| |
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| T |
21124223 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaataagttttgtgtattatctagtgagaggttgattaggaagg |
21124322 |
T |
|
| Q |
122 |
agagtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatc |
198 |
Q |
| |
|
|||| || |||||| | ||| | || | || ||||||| | ||| |||||||||||| ||||||||||| ||||| |
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|
| T |
21124323 |
agagaatttgttgggaaatcatagctttcccccaaaatggtagttctttgaagctcacgtaacacaagattaccatc |
21124399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 39130947 - 39130774
Alignment:
| Q |
25 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
124 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||| |||| |||| || |||| ||||| ||||| || ||||||||| ||||||||| |
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|
| T |
39130947 |
atcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaccaagttttgtgtatctagtgagaggttgattaggaaggaga |
39130848 |
T |
|
| Q |
125 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatc |
198 |
Q |
| |
|
|||| ||||||| | ||| | || |||||||| || | | |||||||||||||| ||||||||||| ||||| |
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| T |
39130847 |
gtatttgttggaaaatcatagctttgccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatc |
39130774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 26745558 - 26745598
Alignment:
| Q |
116 |
ggaaggagagtatctgttggagagtcaaaactctgccacaa |
156 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
26745558 |
ggaaggagagtatctgttggggaatcaaaactctgccacaa |
26745598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 26738526 - 26738570
Alignment:
| Q |
116 |
ggaaggagagtatctgttggagagtcaaaactctgccacaaaatg |
160 |
Q |
| |
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|||||||| |||||||||||| | |||||||| |||||||||||| |
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| T |
26738526 |
ggaaggagggtatctgttggaaaatcaaaactttgccacaaaatg |
26738570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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