View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_86 (Length: 216)

Name: NF17897_low_86
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_86
NF17897_low_86
[»] chr2 (14 HSPs)
chr2 (1-205)||(39369513-39369717)
chr2 (13-192)||(39220437-39220616)
chr2 (11-192)||(39602266-39602447)
chr2 (29-187)||(39199155-39199313)
chr2 (50-187)||(39381907-39382044)
chr2 (11-192)||(39450774-39450955)
chr2 (68-172)||(44896048-44896152)
chr2 (76-192)||(39495263-39495379)
chr2 (46-151)||(39391503-39391608)
chr2 (51-192)||(39129719-39129860)
chr2 (62-157)||(39398857-39398952)
chr2 (46-157)||(39161214-39161325)
chr2 (46-157)||(39207869-39207980)
chr2 (62-157)||(39479023-39479118)
[»] chr5 (1 HSPs)
chr5 (46-157)||(33559747-33559858)
[»] chr6 (2 HSPs)
chr6 (1-157)||(16112599-16112755)
chr6 (118-150)||(16112564-16112596)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 39369717 - 39369513
Alignment:
Q  1 tacctgtagtaacttcttcttttcggagtctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39369717 tacctgtagtaacttcttcttttcggagtctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattcc 39369618  T
Q  101 acagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatcaatgttatcaatgacttgacgaagatcatctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39369617 acagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatcaatgttatcaatgacttgacgaagatcatctt 39369518  T
Q  201 catct 205  Q
    |||||    
T  39369517 catct 39369513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 39220616 - 39220437
Alignment:
Q  13 cttcttcttttcggagtctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttca 112  Q
    ||||||| |||| || |||||||||||  || ||||||||||||| || |||||||||||||||||  ||||||||||| || | |||| || || ||||    
T  39220616 cttcttcctttcagattctaacttttctgcttgttcaccaattaatttgttcactgcatcaagctcgttctctttggccttacagtccaaagcaagttca 39220517  T
Q  113 gcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatcaatgttatcaatgacttgacgaag 192  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39220516 gcaattttttgggaaagagccttgatttcctcttccttcctttcatggtccttatcaatgttatcaatgacttgacgaag 39220437  T

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Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 39602447 - 39602266
Alignment:
Q  11 aacttcttcttttcggagtctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaattt 110  Q
    ||||||||| ||| ||| ||||| |||||  || |  ||||||||||  | |||| ||||||||||||||||||||||||| ||| ||||| ||||| ||    
T  39602447 aacttcttccttttggactctaatttttctgcttgcccaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaatt 39602348  T
Q  111 cagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatcaatgttatcaatgacttgacgaag 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  39602347 cagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaatgactcgacgaag 39602266  T

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Target: chr2; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 39199155 - 39199313
Alignment:
Q  29 tctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaa 128  Q
    |||||||||||| |  ||||||||||||| || ||||||||| |||||||| ||| ||||||| || |||||| ||||| ||||||||||| ||||||||    
T  39199155 tctaacttttccgcctgttcaccaattaatttgttcactgcaccaagctctttctgtttggccttatattccaaagtaaattcagcaatttgttgggaaa 39199254  T
Q  129 gagccttgagttcctcttccttcctttcatggaccttatcaatgttatcaatgacttga 187  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  39199255 gagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaatgacttga 39199313  T

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Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 39381907 - 39382044
Alignment:
Q  50 ccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttcct 149  Q
    |||||||| || |||| || |||||||||||||||||||||| ||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||||||    
T  39381907 ccaattaacttgttcattgtatcaagctctatctctttggccttaagttccaaaataaattcagcaatttgttgggaaagagccttgagttcctcttcct 39382006  T
Q  150 tcctttcatggaccttatcaatgttatcaatgacttga 187  Q
    |||||||| || ||||||||||||||||||||||||||    
T  39382007 tcctttcacggtccttatcaatgttatcaatgacttga 39382044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 39450955 - 39450774
Alignment:
Q  11 aacttcttcttttcggagtctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaattt 110  Q
    ||||| |||||||| || ||||| |||||  || |||  |||||||  || |||| ||||||||| ||||||||||||||| || |||  | ||||| ||    
T  39450955 aacttgttcttttcagactctaatttttcagcttgtttgccaattagtttgttcaatgcatcaagttctatctctttggccttacatttaaaagtaaatt 39450856  T
Q  111 cagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatcaatgttatcaatgacttgacgaag 192  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  39450855 cagcatttttttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttaacaatgacttgacgaag 39450774  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 44896048 - 44896152
Alignment:
Q  68 gcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttat 167  Q
    |||||||| ||| ||||||||||| ||| ||||| ||||  |||| ||||||||||||||||||||||||||| |||||||||||||||| |  ||||||    
T  44896048 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttgagttgctcttccttcctttcacgatccttat 44896147  T
Q  168 caatg 172  Q
    |||||    
T  44896148 caatg 44896152  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 39495263 - 39495379
Alignment:
Q  76 ctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatcaatgtta 175  Q
    |||| ||||||||||| ||| |||||||| |  || ||||||||||||||||||||| |||||||||| |||||||| ||||  ||||||||||  ||||    
T  39495263 ctctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacagaccttatcaccgtta 39495362  T
Q  176 tcaatgacttgacgaag 192  Q
    || |||||| |||||||    
T  39495363 tccatgactggacgaag 39495379  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 39391503 - 39391608
Alignment:
Q  46 ttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctct 145  Q
    |||||||||||| || ||   ||||||||| ||| |||||||||||  || ||||||||||  |||| |||||||||||||||||||||| |||||||||    
T  39391503 ttcaccaattaatttgtttgttgcatcaagatctttctctttggcctgaagttccacagtacattcaacaattttttgggaaagagccttcagttcctct 39391602  T
Q  146 tccttc 151  Q
    ||||||    
T  39391603 tccttc 39391608  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 39129860 - 39129719
Alignment:
Q  51 caattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttcctt 150  Q
    ||||||| || |||| ||||||| ||||| ||||||||  | | | ||||||||||   | |||||| |||||||||||| |||||||||||| || |||    
T  39129860 caattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaagatccttgagttcctgtttctt 39129761  T
Q  151 cctttcatggaccttatcaatgttatcaatgacttgacgaag 192  Q
    |||||||| ||  |||||||||||||| |||| | |||||||    
T  39129760 cctttcatagatattatcaatgttatccatgagtggacgaag 39129719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 39398857 - 39398952
Alignment:
Q  62 ttcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttca 157  Q
    |||| ||||||||||||| ||||||||| |   | ||||| | ||  ||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  39398857 ttcattgcatcaagctctttctctttggactctagttccatattacattcggcaactttttgggcaagagccttgagttcctcttccttcctttca 39398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 39161325 - 39161214
Alignment:
Q  46 ttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctct 145  Q
    ||||| |||||| || |||||||||||||| |||  |||||||| | ||| | ||| ||||  ||||| || |||| ||||||||| | |||||||||||    
T  39161325 ttcactaattaatttgttcactgcatcaagatcttcctctttggtcttaagtaccaaagtacattcagtaacttttagggaaagagtcctgagttcctct 39161226  T
Q  146 tccttcctttca 157  Q
    |||||| |||||    
T  39161225 tccttcatttca 39161214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 39207869 - 39207980
Alignment:
Q  46 ttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctct 145  Q
    ||||| |||||| || |||||||||||||| |||  |||||||| | ||| | ||| ||||  ||||| || |||| ||||||||| | |||||||||||    
T  39207869 ttcactaattaatttgttcactgcatcaagatcttcctctttggtcttaagtaccaaagtacattcagtaacttttagggaaagagtcctgagttcctct 39207968  T
Q  146 tccttcctttca 157  Q
    |||||| |||||    
T  39207969 tccttcatttca 39207980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 39479023 - 39479118
Alignment:
Q  62 ttcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttca 157  Q
    |||| |||||||||||||  ||| |||| | ||| ||||| | ||  ||||| || ||| | || |||||||||||||||||||||||||||||||    
T  39479023 ttcattgcatcaagctcttgctcgttggtcttaagttccagattacattcagaaactttctcggtaagagccttgagttcctcttccttcctttca 39479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 33559858 - 33559747
Alignment:
Q  46 ttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctct 145  Q
    |||||||| ||| || ||||  |||||||| ||| |||||||| ||  || ||||||||||  ||||||||  ||||||||||||||| |||||||||||    
T  33559858 ttcaccaactaatttgttcatcgcatcaagatctttctctttgacctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctct 33559759  T
Q  146 tccttcctttca 157  Q
    ||| || |||||    
T  33559758 tccgtcatttca 33559747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 16112755 - 16112599
Alignment:
Q  1 tacctgtagtaacttcttcttttcggagtctaacttttcctctagttcaccaattaagttattcactgcatcaagctctatctctttggccataaattcc 100  Q
    ||||| |||||||| |||| ||||||| |||||  ||||| || || | | |||| |  | |||| ||||||||||||| |||| |||| | ||| ||||    
T  16112755 tacctttagtaactgcttcctttcggactctaatatttccgcttgtccgctaattgatattttcattgcatcaagctctttctccttggacttaagttcc 16112656  T
Q  101 acagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttca 157  Q
    | | ||  ||| |||| |||||||  |||||||||||||||||||| ||| ||||||    
T  16112655 agattaccttccgcaactttttggttaagagccttgagttcctctttcttgctttca 16112599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 16112596 - 16112564
Alignment:
Q  118 tttttgggaaagagccttgagttcctcttcctt 150  Q
    |||||||| ||||||||||||||||||||||||    
T  16112596 tttttgggtaagagccttgagttcctcttcctt 16112564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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