View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_9 (Length: 585)
Name: NF17897_low_9
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 222 - 570
Target Start/End: Original strand, 6291574 - 6291922
Alignment:
| Q |
222 |
ccttaaatttttaactctaagaattactataacttgtacaatatttagtactaattcattgattaatttgaaattatatagatattggatactgttttgg |
321 |
Q |
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| T |
6291574 |
ccttaaatttttaactctaagaattactataacttgtacaatatttagtactaattcattgattaatttgaaattatatagatattggatactgttttgg |
6291673 |
T |
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| Q |
322 |
gatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatgacaca |
421 |
Q |
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| T |
6291674 |
gatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatgacaca |
6291773 |
T |
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| Q |
422 |
aatcctcaaattcttagtacattttcaaaatcaaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaacaagcac |
521 |
Q |
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| T |
6291774 |
aatcctcaaattctaagtacattttcaaaatcaaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaacaagcac |
6291873 |
T |
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| Q |
522 |
ttcaatgggtgaacagccgcatcataccgtacctacctaacacaaaaat |
570 |
Q |
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| T |
6291874 |
ttcaatgggtgaacagccgcatcataccgtacctacctaacacaaaaat |
6291922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 6291363 - 6291510
Alignment:
| Q |
11 |
tccaagaatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcct |
110 |
Q |
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| T |
6291363 |
tccaaaaatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcct |
6291462 |
T |
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| Q |
111 |
agaatcttttgtcttccttcctcacaatgacaatattcatcacaacaa |
158 |
Q |
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| T |
6291463 |
agaatcttttctcttccttcctcacaatgacaatattcatcacaacaa |
6291510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 531
Target Start/End: Complemental strand, 32857160 - 32856946
Alignment:
| Q |
317 |
tttgggatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatg |
416 |
Q |
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| T |
32857160 |
tttggaataaactatggacaagtagctaacaatttgccacaaccagaaaaagtactagaacttctcagcaccttaaagatcacaaaaacaagaatctacg |
32857061 |
T |
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| Q |
417 |
acacaaatcctcaaattcttagtacattttcaaaatcaaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaaca |
516 |
Q |
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| T |
32857060 |
atacgaatccacagattcttaaagctttcgccaattcaaacgtggaaatcatcgtaacaattgaaaatcaaatactaaaccaattaaatgatccacaaca |
32856961 |
T |
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| Q |
517 |
agcacttcaatgggt |
531 |
Q |
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| T |
32856960 |
agcacttcaatgggt |
32856946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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