View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_91 (Length: 204)
Name: NF17897_low_91
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_91 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 2250631 - 2250805
Alignment:
| Q |
18 |
aatttagttcttgaaattgtctggtaaggactaatttgatcgaaaattttcaaattcaagaacattttgaaatttccttgattccatagattaaattgac |
117 |
Q |
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| T |
2250631 |
aatttagttcttgaaatggtctggtaaggactaatttgatcgaaaattttcaaattcaagaacattttgaaatttccttgattccatagattaaattgac |
2250730 |
T |
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| Q |
118 |
aacatcttacaatttcataaactaaattggttcatttcttataaattaagattcaataaattagatttttatatt |
192 |
Q |
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| T |
2250731 |
aacatcttacaatctcattaactaaattggttcacttcttataaattaagattcaataaattagatttttatatt |
2250805 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 7675535 - 7675569
Alignment:
| Q |
45 |
ggactaatttgatcgaaaattttcaaattcaagaa |
79 |
Q |
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| T |
7675535 |
ggactaatgtgatcgaaaattttcaaattcaagaa |
7675569 |
T |
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