View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17898_high_11 (Length: 386)

Name: NF17898_high_11
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17898_high_11
NF17898_high_11
[»] scaffold0065 (5 HSPs)
scaffold0065 (145-311)||(49787-49953)
scaffold0065 (257-344)||(44658-44745)
scaffold0065 (53-126)||(50003-50076)
scaffold0065 (50-126)||(44856-44932)
scaffold0065 (140-181)||(44789-44830)
[»] chr8 (6 HSPs)
chr8 (69-128)||(3174051-3174110)
chr8 (49-127)||(2978920-2978998)
chr8 (64-127)||(3142850-3142913)
chr8 (64-127)||(3161804-3161867)
chr8 (69-127)||(13790633-13790691)
chr8 (69-125)||(3283187-3283243)
[»] chr1 (1 HSPs)
chr1 (45-127)||(10756313-10756395)
[»] chr4 (1 HSPs)
chr4 (45-127)||(8572421-8572503)
[»] chr3 (1 HSPs)
chr3 (45-127)||(28698381-28698463)


Alignment Details
Target: scaffold0065 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 145 - 311
Target Start/End: Complemental strand, 49953 - 49787
Alignment:
Q  145 agttgcagagtgatcagtttgagagtaggaaaagcatggtatactcttggtagtatacatacatattaaccattggataggactaaaatgtaattacgtc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  49953 agttgcagagtgatcagtttgagagtaggaaaagcatggtatactcttggtaatatacatacatattaaccattggataggaaaaaaatgtaattacgtc 49854  T
Q  245 ttagaaaaatgattaagttaattgaccaatagtgggaaagatcacatggccctgtctacgctccatc 311  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49853 ttagaaaaattatcaagttaattgaccaatagtgggaaagatcacatggcactgtctacgctccatc 49787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 44745 - 44658
Alignment:
Q  257 ttaagttaattgaccaatagtgggaaagatcacatggccctgtctacgctccatcacagttttccgaagagaaatttggccatatcta 344  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44745 ttaatttaattgaccaatagtgggcaagatcacatggccctgtctacgctccatcacagttttccaaagagaaatttggccatatcta 44658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 50076 - 50003
Alignment:
Q  53 tgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaa 126  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |  ||||||||||||||    
T  50076 tgttgaaaattaagtaacctgttaatgaggctagcagcaacagcatatgggatttgtttagccatctttcaaaa 50003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 44932 - 44856
Alignment:
Q  50 aagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaa 126  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |||||  |||||||    
T  44932 aagtgatgaaaatgaactaacctgttaatgaggctagcagcaacagcatatgggatttgttcagccattcttcaaaa 44856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 44830 - 44789
Alignment:
Q  140 ttgaaagttgcagagtgatcagtttgagagtaggaaaagcat 181  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44830 ttgaaagttgcagagtgatcagtttgagagtaggaaaagcat 44789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 3174051 - 3174110
Alignment:
Q  69 acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaat 128  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||||    
T  3174051 acctgttaatgagacttgcagcaacagcatatggaatttgctcagccattcttcaaaaat 3174110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 2978998 - 2978920
Alignment:
Q  49 aaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    ||||||||||||||||||| ||||||||| |||||| | |||||||   ||||||||||| || |||||| ||||||||    
T  2978998 aaagtgttgaaaatgaagtcacctgttaacgagacttgtagcaacactgtatggaatttgttcagccatccttcaaaaa 2978920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 3142850 - 3142913
Alignment:
Q  64 aagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    |||||||||||||| ||| || |||||||||||||| |||||||| || |||||| ||||||||    
T  3142850 aagtaacctgttaacgaggcttgcagcaacagcataaggaatttgttcagccatccttcaaaaa 3142913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 3161804 - 3161867
Alignment:
Q  64 aagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    |||||||||||||| ||| || |||||||||||||| |||||||| || |||||| ||||||||    
T  3161804 aagtaacctgttaacgaggcttgcagcaacagcataaggaatttgttcagccatccttcaaaaa 3161867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 13790691 - 13790633
Alignment:
Q  69 acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    ||||||||| ||| ||  ||||||||||||||||||||||||| |||||| ||||||||    
T  13790691 acctgttaaagaggctttcagcaacagcatatggaatttgctcagccatccttcaaaaa 13790633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 3283187 - 3283243
Alignment:
Q  69 acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaa 125  Q
    ||||||||| ||| ||  |||||||||| ||||||||||||||||||||| ||||||    
T  3283187 acctgttaaagaggctttcagcaacagcgtatggaatttgctcggccatccttcaaa 3283243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 10756313 - 10756395
Alignment:
Q  45 tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    |||||||| |||||||||||| ||||| ||||||||| ||   ||||||| | ||||||||||| || |||||||||||||||    
T  10756313 tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtatggaatttgttcagccatctttcaaaaa 10756395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 8572503 - 8572421
Alignment:
Q  45 tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    |||||||| |||||||||||| ||||| ||||||||| ||   ||||||| | | ||||||||| || |||||| ||||||||    
T  8572503 tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtgtggaatttgttcagccatccttcaaaaa 8572421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 28698463 - 28698381
Alignment:
Q  45 tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa 127  Q
    |||||||| |||||||||||| ||||| ||||||||| ||   ||||||| | | ||||||||| || |||||| ||||||||    
T  28698463 tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtgtggaatttgttcagccatccttcaaaaa 28698381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University