View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17898_low_1 (Length: 818)

Name: NF17898_low_1
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17898_low_1
NF17898_low_1
[»] chr3 (6 HSPs)
chr3 (1-378)||(35694437-35694814)
chr3 (537-806)||(35694965-35695240)
chr3 (26-106)||(35689918-35689998)
chr3 (736-802)||(557578-557645)
chr3 (752-799)||(47720898-47720945)
chr3 (738-802)||(42433440-42433504)
[»] chr6 (2 HSPs)
chr6 (597-802)||(1717632-1717837)
chr6 (735-802)||(31750232-31750300)
[»] chr2 (5 HSPs)
chr2 (569-799)||(25221574-25221804)
chr2 (564-802)||(31055370-31055607)
chr2 (736-792)||(17303530-17303587)
chr2 (591-664)||(35658133-35658206)
chr2 (632-694)||(38001941-38002003)
[»] chr4 (4 HSPs)
chr4 (564-802)||(7784604-7784842)
chr4 (569-790)||(51267303-51267521)
chr4 (749-802)||(22065807-22065860)
chr4 (685-801)||(41322015-41322132)
[»] chr5 (2 HSPs)
chr5 (734-802)||(3925536-3925607)
chr5 (741-801)||(18012869-18012929)
[»] scaffold0445 (1 HSPs)
scaffold0445 (734-794)||(10393-10454)
[»] chr7 (1 HSPs)
chr7 (736-793)||(22575221-22575279)
[»] chr1 (1 HSPs)
chr1 (734-790)||(32365995-32366052)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 35694437 - 35694814
Alignment:
Q  1 ttgaaactagcagtacaagactataatacaaggatagtaaagtaaggaaacatagaagtacctgagtgaagaacacacattaatgtggtggcttaagaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694437 ttgaaactagcagtacaagactataatacaaggatagtaaagtaaggaaacatagaagtacctgagtgaagaacacacattaatgtggtggcttaagaag 35694536  T
Q  101 agtgttgcttgaaaagcaacaacataggatatgaagtatgagtttcactctcagcaaaggaagagaaagaaggagcgaaaggaagagataacatactcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35694537 agtgttgcttgaaaagcaacaacataggatatgaagtatgagtttcactctcagcaaaggaagagaaagaaggagcaaaaggaagagataacatactcag 35694636  T
Q  201 cttcattgattgtgtgaggaaactaattggtcaacattcaagtcaattccaaaaagtctccttaacttaagagttattaagtcaaactttgttttgtgaa 300  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694637 cttcagtgattgtgtgaggaaattaattggtcaacattcaagtcaattccaaaaagtctccttaacttaagagttattaagtcaaactttgttttgtgaa 35694736  T
Q  301 actaattacatgtttctcattaggagtagaaaaggagatttattagtggtttcctttgatatatgttttcttgaacag 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694737 actaattacatgtttctcattaggagtagaaaaggagatttattagtggtttcctttgatatatgttttcttgaacag 35694814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 537 - 806
Target Start/End: Original strand, 35694965 - 35695240
Alignment:
Q  537 aaagtttggttaccgacggtttgaacttgatctgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttcca 636  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  35694965 aaagtttggttaccgacggtttggacttgatatgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattctcttattcttcca 35695064  T
Q  637 ggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccg-----gtaccgtccttttatccgttgcagtgcgtgtgattgttttcggag 731  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||||||||     ||||||||||||||||||| | ||| |||||||||||||||||||    
T  35695065 ggtctattgagatctgcagatcttgatgcttcaggtccgcctccacaccggtaccgtaccgtccttttatccgtcgtagtccgtgtgattgttttcggag 35695164  T
Q  732 tgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatctt-gttaccgtgatga 806  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||| |||||||||    
T  35695165 tgatgctcgaaagagctttatacctgctgctttgtttaggggattgctggtacgtggatcttagttgccgtgatga 35695240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 35689998 - 35689918
Alignment:
Q  26 atacaaggatagtaaagtaaggaaacatagaagtacctgagtgaagaacacacattaatgtggtggcttaagaagagtgtt 106  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35689998 atacaaggatagtaaagtaagaaaatatagaagtacctgagtgaagaacacaaattaatgtggtggcttaagaagagtgtt 35689918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 736 - 802
Target Start/End: Original strand, 557578 - 557645
Alignment:
Q  736 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 802  Q
    ||||||||||||| ||||||||  || |||||| |||||||||||||||||||||||||| |||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtg 557645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 752 - 799
Target Start/End: Original strand, 47720898 - 47720945
Alignment:
Q  752 tacctactgctttgtttagggggttgttggtacgtggatcttgttacc 799  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| ||||    
T  47720898 tacctgctgttttgttcagggggttgttggtacgtggatcttgatacc 47720945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 738 - 802
Target Start/End: Complemental strand, 42433504 - 42433440
Alignment:
Q  738 tcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 802  Q
    ||||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||| | |||||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtg 42433440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 5e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 597 - 802
Target Start/End: Complemental strand, 1717837 - 1717632
Alignment:
Q  597 gttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtcct 696  Q
    ||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||| | ||| ||| || ||| ||||||| |||||    
T  1717837 gttgtgttgatgttccttgcttgattctctgattttttcaggtctgttgagatctgcaggtctcgatgcatcagggccgacttcactccggtacagtcct 1717738  T
Q  697 tttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgtt 796  Q
     || || |||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||  ||||||| |||||    
T  1717737 cttgtctgttgcagtccttgtgattgttttcggagtgttgctcgaaagagctttatacctgctgctttgttcagggggttgctggatcgtggattttgtt 1717638  T
Q  797 accgtg 802  Q
    ||||||    
T  1717637 accgtg 1717632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 802
Target Start/End: Original strand, 31750232 - 31750300
Alignment:
Q  735 tgctcgaaagagct-ttatacctactgctttgtttaggggg-ttgttggtacgtggatcttgttaccgtg 802  Q
    |||||||||||||| |||||||| ||||||| || |||||| ||| |||||||||||| |||||||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtg 31750300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 8e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 569 - 799
Target Start/End: Original strand, 25221574 - 25221804
Alignment:
Q  569 tgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgcttt 668  Q
    ||||||||||   ||| |||||||||  | |||||||||||||||||||||||| ||||||  || ||||||||||||||| ||||||||||||||| |     
T  25221574 tgggttcaaaagtgtttttgagaaaccggctgtgttggtgttccttgcttgattctctgatattttcaggtctgttgagatttgcaggtcttgatgcatc 25221673  T
Q  669 aggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgttt 768  Q
    |||||||||| |||   ||||||||| | || ||||||||||| | |||||||||| ||||| || |||||||||||||||||||||| ||| ||||||     
T  25221674 aggtccgccttcactatggtaccgtcttcttgtccgttgcagtccttgtgattgttctcggattgttgctcgaaagagctttatacctgctgatttgttc 25221773  T
Q  769 agggggttgttggtacgtggatcttgttacc 799  Q
    ||||||||| ||| |||||||||||| ||||    
T  25221774 agggggttgctggaacgtggatcttggtacc 25221804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 564 - 802
Target Start/End: Original strand, 31055370 - 31055607
Alignment:
Q  564 tgatctgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgat 663  Q
    |||| ||||||||||  | || |||||||||  ||||||||| ||||||| |||||||| ||||||  || ||||| ||||||||| |||||||||  ||    
T  31055370 tgatatgggttcaaaatcttttttgagaaaccggttgtgttgatgttcctagcttgattctctgatattttcaggtttgttgagatatgcaggtctcaat 31055469  T
Q  664 gctttaggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctt 763  Q
    || | |||||| ||| ||| ||||||||||| | || ||| ||||||| | ||||| |||| |||||||| |||||||||||||||||||||| ||||||    
T  31055470 gcatcaggtcctccttcactccggtaccgtcatcttgtcccttgcagtccttgtgagtgttctcggagtgttgctcgaaagagctttataccttctgctt 31055569  T
Q  764 tgtttagggggttgttggtacgtggatcttgttaccgtg 802  Q
    | || ||||||||| |||  ||||||| |||||||||||    
T  31055570 ttttcagggggttgctggaccgtggat-ttgttaccgtg 31055607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 736 - 792
Target Start/End: Original strand, 17303530 - 17303587
Alignment:
Q  736 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatct 792  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatct 17303587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 664
Target Start/End: Original strand, 35658133 - 35658206
Alignment:
Q  591 aaactagttgtgttggtgttcct-tgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatg 664  Q
    |||||||||  |||||| ||||| ||||||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  35658133 aaactagtttagttggttttcctgtgcttgattctctgatg-ttccaggtctgtttagatctgcaggtcttgatg 35658206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 694
Target Start/End: Original strand, 38001941 - 38002003
Alignment:
Q  632 ttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtc 694  Q
    ||||||||||||| ||||||||||||||  |||| | | ||| |||||||| |||||||||||    
T  38001941 ttccaggtctgtttagatctgcaggtctctatgcgtcaagtctgcctccactccggtaccgtc 38002003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 564 - 802
Target Start/End: Original strand, 7784604 - 7784842
Alignment:
Q  564 tgatctgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgat 663  Q
    |||| ||||||||||  |||| || ||||||  |||| ||||||||||||||||||||| ||||||  |||||| ||| ||||||||||||| ||| |||    
T  7784604 tgatatgggttcaaaagcgtttttaagaaaccggttgagttggtgttccttgcttgattctctgatatttccagctcttttgagatctgcagctctcgat 7784703  T
Q  664 gctttaggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctt 763  Q
    || | ||| |||||| ||| |  ||||||||   || ||||||||||| | || ||||||| || ||||| ||||||||||||| |||||||| ||||||    
T  7784704 gcatcaggcccgccttcactctagtaccgtctcattttccgttgcagtccttgggattgttctcagagtgttgctcgaaagagcgttatacctgctgctt 7784803  T
Q  764 tgtttagggggttgttggtacgtggatcttgttaccgtg 802  Q
    || | ||||| ||| ||| |||||||| |||||||||||    
T  7784804 tgctcaggggattgctggaacgtggattttgttaccgtg 7784842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 569 - 790
Target Start/End: Original strand, 51267303 - 51267521
Alignment:
Q  569 tgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgcttt 668  Q
    ||||||||||  || | |||||||||  || | ||| ||||| ||||||||||| ||| ||  |||||||||| ||||||||||||||||| ||||| ||    
T  51267303 tgggttcaaaagcgattttgagaaaccggtggagtttgtgtttcttgcttgattctctaatatttccaggtctattgagatctgcaggtctcgatgcatt 51267402  T
Q  669 aggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgttt 768  Q
    |||||| |||  || |||||  ||||   || || |||||||| | ||||| |||| || ||||| ||||||||| |||||||||||| ||||||||||     
T  51267403 aggtccaccttaactccggtgtcgtc---ttgtctgttgcagtccttgtgactgttctcagagtgttgctcgaaaaagctttatacctgctgctttgttc 51267499  T
Q  769 agggggttgttggtacgtggat 790  Q
    ||||||||| ||| ||||||||    
T  51267500 agggggttgctggaacgtggat 51267521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 749 - 802
Target Start/End: Original strand, 22065807 - 22065860
Alignment:
Q  749 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 802  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  22065807 ttatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtg 22065860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 801
Target Start/End: Original strand, 41322015 - 41322132
Alignment:
Q  685 cggtaccgtccttttatccgttgcagtgcgtgtga-ttgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggta 783  Q
    |||||| ||||| |||||||||||||| | ||||| ||||||| |  ||| ||||||| |||||||||||||| |||||||||| ||||  ||| |||      
T  41322015 cggtactgtcctcttatccgttgcagttcttgtgacttgttttagaggtgttgctcgacagagctttatacctgctgctttgttcagggaattgctggac 41322114  T
Q  784 cgtggatcttgttaccgt 801  Q
     |||||||||||||||||    
T  41322115 tgtggatcttgttaccgt 41322132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 734 - 802
Target Start/End: Original strand, 3925536 - 3925607
Alignment:
Q  734 atgctcgaaagagct----ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 802  Q
    |||||||||||||||    |||||||| |||||||||| ||||||||| |||||||||||| |||||||||||    
T  3925536 atgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtg 3925607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 741 - 801
Target Start/End: Original strand, 18012869 - 18012929
Alignment:
Q  741 aaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgt 801  Q
    |||||||||| | | | |||||||||| | |||||||||||||||||||||||| ||||||    
T  18012869 aaagagctttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgt 18012929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 734 - 794
Target Start/End: Original strand, 10393 - 10454
Alignment:
Q  734 atgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttg 794  Q
    |||||| ||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  10393 atgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttg 10454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 736 - 793
Target Start/End: Complemental strand, 22575279 - 22575221
Alignment:
Q  736 gctcgaaagagc-tttatacctactgctttgtttagggggttgttggtacgtggatctt 793  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||| |||||||||||||||    
T  22575279 gctcgaaagagcatttacgcctgctgctttgttcagggggttgctggtacgtggatctt 22575221  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 790
Target Start/End: Original strand, 32365995 - 32366052
Alignment:
Q  734 atgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggat 790  Q
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T  32365995 atgctcgaaagagcttttatgcctgctgcattgtttgaggggttgttggtacgtggat 32366052  T

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