View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17898_low_10 (Length: 407)
Name: NF17898_low_10
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 43166333 - 43166720
Alignment:
| Q |
1 |
tgcttcttcccagtttccaataaggtgatcattctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
43166333 |
tgcttcttcccagtttccaataaggtgatcatgctgggtgctaattcaagaataaagcaggaactcgagtcaaaaaaacaagaattccgctacgaagaag |
43166432 |
T |
|
| Q |
101 |
tatacagaattaccagaaactttaagacggttttggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43166433 |
tatacagaattaccagaaactttaagacggttttggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggtagctgtcaa |
43166532 |
T |
|
| Q |
201 |
aatgctgtcttcctcatcagctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaattttatcatgcctatgtgtgtgtgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43166533 |
aatgctgtcttcctcatcagctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaattttatcatgcctatgtgtgtgtgta |
43166632 |
T |
|
| Q |
301 |
tagatagttaatgaattttatgttaactaaatatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaata |
388 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43166633 |
tagatagttaatgaatttaatgttaactaaatatggtttttctttgtgattcataggccaaattttttgctacagttcatcataaata |
43166720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 43221613 - 43221225
Alignment:
| Q |
1 |
tgcttcttcccagtttccaataaggtgatcattctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
43221613 |
tgcttcttcccagtttcccataaggtgatcaagctgggtgctaattcaagaataaagcaggaactagagtcgaagaaacaagaattcacctatgaagaag |
43221514 |
T |
|
| Q |
101 |
tatacagaattaccagaaactttaagacggttttggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaa |
200 |
Q |
| |
|
||| |||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||| |
|
|
| T |
43221513 |
tattaagaattaccagaaactttgagaaggttatagggaaaggagcatctggaacagtctaccatggctggattgatcataatac-------actgtcaa |
43221421 |
T |
|
| Q |
201 |
aatgctgtcttcctcatcagctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaatttta--tcatg-----cct-atgtg |
292 |
Q |
| |
|
|||||| ||||||| ||| |||||||||| |||||||||||||||||||||| ||| |||||||||| | | ||||||| | ||| ||| || || |
|
|
| T |
43221420 |
aatgctatcttccttatctgctcaaggatttctgcaatttcaagcagaggttgtatcattaattcacttgccaattttagttaatgtgaatcctaatctg |
43221321 |
T |
|
| Q |
293 |
tgtgtgtatagatagttaatgaattttatgttaactaaatatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaata |
388 |
Q |
| |
|
|||| || | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43221320 |
tgtgcgtgtgtatagttaatgaatttaatgttaactaaatatggtttttctttgtgattcataggccaaattttttgctacagttcatcataaata |
43221225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 34 - 264
Target Start/End: Original strand, 43175352 - 43175582
Alignment:
| Q |
34 |
ctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaagtatacagaattaccagaaactttaagacggttt |
133 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||| | | |||| |
|
|
| T |
43175352 |
ctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtattaagcattaccagaaactttgaaaaggttg |
43175451 |
T |
|
| Q |
134 |
tggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaaaatgctgtcttcctcatcagctcaaggatatct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43175452 |
tggggaaaggagcatctggaacagtctaccatggctggattgatcataataccgaggtagctgtcaaaatgctatcttcctcatcagctcaaggatatct |
43175551 |
T |
|
| Q |
234 |
gcaatttcaagcagaggttatatgattaatt |
264 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |
|
|
| T |
43175552 |
gcaatttcaagcagaggtagtatcattaatt |
43175582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 388
Target Start/End: Original strand, 43175653 - 43175709
Alignment:
| Q |
332 |
tatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaata |
388 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
43175653 |
tatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaata |
43175709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University