View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17898_low_12 (Length: 391)

Name: NF17898_low_12
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17898_low_12
NF17898_low_12
[»] scaffold0078 (4 HSPs)
scaffold0078 (20-381)||(2551-2912)
scaffold0078 (20-381)||(57094-57455)
scaffold0078 (27-376)||(21813-22159)
scaffold0078 (40-166)||(60857-60983)
[»] chr7 (3 HSPs)
chr7 (16-381)||(16566207-16566572)
chr7 (16-381)||(16599090-16599455)
chr7 (90-130)||(16490658-16490698)
[»] scaffold0184 (2 HSPs)
scaffold0184 (20-381)||(15389-15750)
scaffold0184 (40-166)||(11861-11987)
[»] chr8 (5 HSPs)
chr8 (24-127)||(2018439-2018542)
chr8 (20-119)||(563959-564058)
chr8 (24-127)||(1963270-1963373)
chr8 (24-123)||(2015056-2015155)
chr8 (20-163)||(3700879-3701022)
[»] chr6 (3 HSPs)
chr6 (91-130)||(845290-845329)
chr6 (91-130)||(875740-875779)
chr6 (20-154)||(8294638-8294772)
[»] chr1 (2 HSPs)
chr1 (24-127)||(5902443-5902546)
chr1 (24-127)||(5905927-5906030)


Alignment Details
Target: scaffold0078 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 2912 - 2551
Alignment:
Q  20 tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2912 tctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttccaaaagaaaca 2813  T
Q  120 tacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcgccaacaacatcattgttacttgaccctatttgtgtaatgggtc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  2812 tacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatcattgttacttgaccctatttgtgtaataggtc 2713  T
Q  220 cgacgggaaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaatgcaaagaaactgttaaacaagattccatcaac 319  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2712 cgacgggaaaaaacccgatttttccatcacccttttgctccaatgcttttatagcacttgattccaatgcaaagaaactgttaaacaagattccatcaac 2613  T
Q  320 aaaatacatacctttggcacgttgaagatacattttgtaagcttgacctgatctatcctttg 381  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2612 agaatacatacctttagcacgttgaagatacattttgtaagcttgacctgatctatcttttg 2551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 57455 - 57094
Alignment:
Q  20 tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  57455 tctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaaca 57356  T
Q  120 tacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcgccaacaacatcattgttacttgaccctatttgtgtaatgggtc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  57355 tacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatcattgttacttgaccctatttgtgtaatgggtc 57256  T
Q  220 cgacgggaaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaatgcaaagaaactgttaaacaagattccatcaac 319  Q
    |||||||||||| |||||||||| ||| | ||||||| |||||||||||| ||||||| ||||| ||| | ||||| || ||||||||||||||||||||    
T  57255 cgacgggaaaaaacccgatttttccataacccttttgttccaatgcttttgtagcacttgattctaattctaagaagctattaaacaagattccatcaac 57156  T
Q  320 aaaatacatacctttggcacgttgaagatacattttgtaagcttgacctgatctatcctttg 381  Q
     |||| ||||  ||| ||||||||||||  |||||||||||||| |  ||||||||| ||||    
T  57155 caaatgcatattttttgcacgttgaagaagcattttgtaagcttcatttgatctatcttttg 57094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 27 - 376
Target Start/End: Complemental strand, 22159 - 21813
Alignment:
Q  27 acccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaa 126  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  22159 acccaaatgaatctttgaccactcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaa 22060  T
Q  127 cagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcgccaacaacatcattgttacttgaccctatttgtgtaatgggtccgacggg 226  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||   || ||||||||||||||||| ||||| |||||||||||||||| || ||    
T  22059 ctgaattttgtggttggtttttcaaccatttcaaacattcaagttcat---caccaacatcattgttacttaaccctgtttgtgtaatgggtccaacagg 21963  T
Q  227 aaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaatgcaaagaaactgttaaacaagattccatcaacaaaatac 326  Q
    |||||   | |||||| ||| | ||||| | |||||||||||||||||||| ||||||||| ||| ||| || || | ||||||||||||||||||||||    
T  21962 aaaaaaatcaatttttccataaccctttagttccaatgcttttatagcacttgattccaattcaatgaagctattgatcaagattccatcaacaaaatac 21863  T
Q  327 atacctttggcacgttgaagatacattttgtaagcttgacctgatctatc 376  Q
    |||| ||| |||||||||| ||||||||||||| ||| |  |||||||||    
T  21862 atactttttgcacgttgaatatacattttgtaaccttcatttgatctatc 21813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 60983 - 60857
Alignment:
Q  40 tttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtgg 139  Q
    |||||| ||| |||||||| ||||||||||  ||||| |  |||  ||||||||||||||||||||||||||| |||||| |||||||||||||          
T  60983 tttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaattagtact 60884  T
Q  140 ttggtttttcaaccatttcaaacattc 166  Q
    ||| ||||||||||| |||||||||||    
T  60883 ttgatttttcaaccacttcaaacattc 60857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 16566572 - 16566207
Alignment:
Q  16 gttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaaga 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  16566572 gttgtctcacaacccaaatgaatctttggctactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaaga 16566473  T
Q  116 aacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcgccaacaacatcattgttacttgaccctatttgtgtaatg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16566472 aacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcaagttcatcgccaacaacatcattgttacttgaccctatttgtgtaatg 16566373  T
Q  216 ggtccgacgggaaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaatgcaaagaaactgttaaacaagattccat 315  Q
    |||||||| ||||||| |||||||||| ||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16566372 ggtccgaccggaaaaaacccgatttttccatcaccattttgctccaaagcttttatagcacttgattccaatgcaaagaaactgttaaacaagattccat 16566273  T
Q  316 caacaaaatacatacctttggcacgttgaagatacattttgtaagcttgacctgatctatcctttg 381  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16566272 caacaaaacacatatctttagcacgttgaagatacattttgtaagcttgacctgatctatcttttg 16566207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 16599090 - 16599455
Alignment:
Q  16 gttgtctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaaga 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  16599090 gttgtctcacaacccaaatgaatctttggctactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaaga 16599189  T
Q  116 aacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcgccaacaacatcattgttacttgaccctatttgtgtaatg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16599190 aacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcaagttcatcgccaacaacatcattgttacttgaccctatttgtgtaatg 16599289  T
Q  216 ggtccgacgggaaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaatgcaaagaaactgttaaacaagattccat 315  Q
    |||||||| ||||||| |||||||||| ||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16599290 ggtccgaccggaaaaaacccgatttttccatcaccattttgctccaaagcttttatagcacttgattccaatgcaaagaaactgttaaacaagattccat 16599389  T
Q  316 caacaaaatacatacctttggcacgttgaagatacattttgtaagcttgacctgatctatcctttg 381  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16599390 caacaaaacacatatctttagcacgttgaagatacattttgtaagcttgacctgatctatcttttg 16599455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 16490698 - 16490658
Alignment:
Q  90 gaaagtgttccaccacttccaaaagaaacatacaaaacaga 130  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  16490698 gaaagtgttccaccacttccaaaagacacaaacaaaacaga 16490658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 15389 - 15750
Alignment:
Q  20 tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  15389 tctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaaca 15488  T
Q  120 tacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcgccaacaacatcattgttacttgaccctatttgtgtaatgggtc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15489 tacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatcattgttacttgaccctatttgtgtaatgggtc 15588  T
Q  220 cgacgggaaaaagcccgattttttcatcaaccttttgctccaatgcttttatagcactggattccaatgcaaagaaactgttaaacaagattccatcaac 319  Q
    |||||||||||| |||||||||| ||| | ||||||| |||||||||||| ||||||| ||||| ||| | ||||| || ||||||||||||||||||||    
T  15589 cgacgggaaaaaacccgatttttccataacccttttgttccaatgcttttgtagcacttgattctaattctaagaagctattaaacaagattccatcaac 15688  T
Q  320 aaaatacatacctttggcacgttgaagatacattttgtaagcttgacctgatctatcctttg 381  Q
     |||| ||||  ||| ||||||||||||  |||||||||||||| |  ||||||||| ||||    
T  15689 caaatgcatattttttgcacgttgaagaagcattttgtaagcttcatttgatctatcttttg 15750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 11861 - 11987
Alignment:
Q  40 tttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtgg 139  Q
    |||||| ||| |||||||| ||||||||||  ||||| |  |||  ||||||||||||||||||||||||||| |||||| |||||||||||||          
T  11861 tttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaattagtact 11960  T
Q  140 ttggtttttcaaccatttcaaacattc 166  Q
    ||| ||||||||||| |||||||||||    
T  11961 ttgatttttcaaccacttcaaacattc 11987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 2018439 - 2018542
Alignment:
Q  24 acaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacataca 123  Q
    |||||||| | |||| | ||| |||||||||||||||| ||||| || ||||| || |||  ||| |||||||| |||||||| ||||||||||||||||    
T  2018439 acaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacataca 2018538  T
Q  124 aaac 127  Q
    ||||    
T  2018539 aaac 2018542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 563959 - 564058
Alignment:
Q  20 tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca 119  Q
    ||||||||||||||  ||  |||||||||||||||| || || || ||||  |||||||| ||  ||||||||| |||||||||||| ||||| ||||||    
T  563959 tctcacaacccaaagaaacttttgactactcaattctaaccctaatgctaactcattcatttggttttgagaaattgttccaccactaccaaatgaaaca 564058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 1963373 - 1963270
Alignment:
Q  24 acaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacataca 123  Q
    |||||||| | |||| | ||| |||||||||||||||| ||||| |  ||||  || |||  ||| |||||||| |||||||| ||||||||||||||||    
T  1963373 acaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacataca 1963274  T
Q  124 aaac 127  Q
    ||||    
T  1963273 aaac 1963270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 2015056 - 2015155
Alignment:
Q  24 acaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacataca 123  Q
    |||||||| | |||| | ||| |||||||||||||||| ||||| || ||||| || |||  ||| ||||||||||||||||| || ||||| |||||||    
T  2015056 acaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacataca 2015155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 3701022 - 3700879
Alignment:
Q  20 tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca 119  Q
    ||||| |||||| | |||| | ||| ||||||| ||||| || |||||||||||||| || |||  |||||| |  ||||| |||||||||||  | |||    
T  3701022 tctcaaaacccacaagaatttctgattactcaactccaaccccaaagctagttcattgatttgttgttgagataaagttcctccacttccaaagcagaca 3700923  T
Q  120 tacaaaacagaattttgtggttggtttttcaaccatttcaaaca 163  Q
    |||||||| || ||| ||| ||| || | |||||| ||||||||    
T  3700922 tacaaaactgagtttggtgtttgattctccaaccacttcaaaca 3700879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 845290 - 845329
Alignment:
Q  91 aaagtgttccaccacttccaaaagaaacatacaaaacaga 130  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  845290 aaagtgttccaccacttccaaatgaaacatacaaaacaga 845329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 875740 - 875779
Alignment:
Q  91 aaagtgttccaccacttccaaaagaaacatacaaaacaga 130  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  875740 aaagtgttccacaacttccaaatgaaacatacaaaacaga 875779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 8294638 - 8294772
Alignment:
Q  20 tctcacaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaaca 119  Q
    |||||||||||| | |||| | |||| ||||||||| | |||||||||||  || || |  ||   |||||| ||||||||||||||||||||||| |||    
T  8294638 tctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagaca 8294737  T
Q  120 tacaaaacagaattttgtggttggtttttcaacca 154  Q
     | | ||||||| || || |||| |||| ||||||    
T  8294738 aaaagaacagaacttggttgttgattttccaacca 8294772  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 5902546 - 5902443
Alignment:
Q  24 acaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacataca 123  Q
    |||||||| | |||| | ||| |||||||||||||||||| ||| |  ||||  || |||  ||| |||||||  |||||||||||||||||||||||||    
T  5902546 acaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacataca 5902447  T
Q  124 aaac 127  Q
    ||||    
T  5902446 aaac 5902443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 5906030 - 5905927
Alignment:
Q  24 acaacccaaatgaatctttgactactcaattccaaaccaaaagctagttcattcatctgtctttgagaaagtgttccaccacttccaaaagaaacataca 123  Q
    |||||||| | |||| | ||| |||||||||||||||||| |||||| ||||   | |||  ||| |||||||  ||||| |||||||||||||||||||    
T  5906030 acaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacataca 5905931  T
Q  124 aaac 127  Q
    ||||    
T  5905930 aaac 5905927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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