View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_13 (Length: 386)
Name: NF17898_low_13
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_13 |
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| [»] scaffold0065 (5 HSPs) |
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Alignment Details
Target: scaffold0065 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 145 - 311
Target Start/End: Complemental strand, 49953 - 49787
Alignment:
| Q |
145 |
agttgcagagtgatcagtttgagagtaggaaaagcatggtatactcttggtagtatacatacatattaaccattggataggactaaaatgtaattacgtc |
244 |
Q |
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| T |
49953 |
agttgcagagtgatcagtttgagagtaggaaaagcatggtatactcttggtaatatacatacatattaaccattggataggaaaaaaatgtaattacgtc |
49854 |
T |
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| Q |
245 |
ttagaaaaatgattaagttaattgaccaatagtgggaaagatcacatggccctgtctacgctccatc |
311 |
Q |
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| T |
49853 |
ttagaaaaattatcaagttaattgaccaatagtgggaaagatcacatggcactgtctacgctccatc |
49787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 44745 - 44658
Alignment:
| Q |
257 |
ttaagttaattgaccaatagtgggaaagatcacatggccctgtctacgctccatcacagttttccgaagagaaatttggccatatcta |
344 |
Q |
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| T |
44745 |
ttaatttaattgaccaatagtgggcaagatcacatggccctgtctacgctccatcacagttttccaaagagaaatttggccatatcta |
44658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 50076 - 50003
Alignment:
| Q |
53 |
tgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaa |
126 |
Q |
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| T |
50076 |
tgttgaaaattaagtaacctgttaatgaggctagcagcaacagcatatgggatttgtttagccatctttcaaaa |
50003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 44932 - 44856
Alignment:
| Q |
50 |
aagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaa |
126 |
Q |
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| T |
44932 |
aagtgatgaaaatgaactaacctgttaatgaggctagcagcaacagcatatgggatttgttcagccattcttcaaaa |
44856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 44830 - 44789
Alignment:
| Q |
140 |
ttgaaagttgcagagtgatcagtttgagagtaggaaaagcat |
181 |
Q |
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| T |
44830 |
ttgaaagttgcagagtgatcagtttgagagtaggaaaagcat |
44789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 3174051 - 3174110
Alignment:
| Q |
69 |
acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaat |
128 |
Q |
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| T |
3174051 |
acctgttaatgagacttgcagcaacagcatatggaatttgctcagccattcttcaaaaat |
3174110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 2978998 - 2978920
Alignment:
| Q |
49 |
aaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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||||||||||||||||||| ||||||||| |||||| | ||||||| ||||||||||| || |||||| |||||||| |
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| T |
2978998 |
aaagtgttgaaaatgaagtcacctgttaacgagacttgtagcaacactgtatggaatttgttcagccatccttcaaaaa |
2978920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 3142850 - 3142913
Alignment:
| Q |
64 |
aagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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| T |
3142850 |
aagtaacctgttaacgaggcttgcagcaacagcataaggaatttgttcagccatccttcaaaaa |
3142913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 3161804 - 3161867
Alignment:
| Q |
64 |
aagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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|||||||||||||| ||| || |||||||||||||| |||||||| || |||||| |||||||| |
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| T |
3161804 |
aagtaacctgttaacgaggcttgcagcaacagcataaggaatttgttcagccatccttcaaaaa |
3161867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 13790691 - 13790633
Alignment:
| Q |
69 |
acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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| T |
13790691 |
acctgttaaagaggctttcagcaacagcatatggaatttgctcagccatccttcaaaaa |
13790633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 3283187 - 3283243
Alignment:
| Q |
69 |
acctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaa |
125 |
Q |
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| T |
3283187 |
acctgttaaagaggctttcagcaacagcgtatggaatttgctcggccatccttcaaa |
3283243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 10756313 - 10756395
Alignment:
| Q |
45 |
tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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| T |
10756313 |
tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtatggaatttgttcagccatctttcaaaaa |
10756395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 8572503 - 8572421
Alignment:
| Q |
45 |
tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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|||||||| |||||||||||| ||||| ||||||||| || ||||||| | | ||||||||| || |||||| |||||||| |
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| T |
8572503 |
tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtgtggaatttgttcagccatccttcaaaaa |
8572421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 28698463 - 28698381
Alignment:
| Q |
45 |
tgataaagtgttgaaaatgaagtaacctgttaatgagactagcagcaacagcatatggaatttgctcggccatctttcaaaaa |
127 |
Q |
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|||||||| |||||||||||| ||||| ||||||||| || ||||||| | | ||||||||| || |||||| |||||||| |
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| T |
28698463 |
tgataaagggttgaaaatgaattaacccgttaatgaggctttgagcaacaccgtgtggaatttgttcagccatccttcaaaaa |
28698381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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