View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_14 (Length: 380)
Name: NF17898_low_14
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 91 - 377
Target Start/End: Complemental strand, 5557083 - 5556796
Alignment:
| Q |
91 |
atactatcaatgcatgcagggacggattcaatgggggcaatagacagtagccttgaccctgtctcttatatatactatataa-ccccacattataatcat |
189 |
Q |
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| T |
5557083 |
ataccatcaatgcatgcagggacggattcaatgggggcaatagacagtagccttgcccctgtctcttatatatactatataatccccacattataatcat |
5556984 |
T |
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| Q |
190 |
atacatgatttaaaagtaattatatctatacaattattttttgtgaagtgaccacgtgattagaagttcacccgtaaagtgaatattaatggagaattta |
289 |
Q |
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| T |
5556983 |
acacatgatttaaaagttattatatctatacaattattttttgtgaagtgaccacgtgattagaaatttacccgtaaagtgaatattaatggagaattta |
5556884 |
T |
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| Q |
290 |
aaatttgaaccacaacacctacgtatataatgcaatatcatatcagttaaacaatgctcacatagactatactttatatattttaata |
377 |
Q |
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| T |
5556883 |
aagtttgaaccacaacacctacgtatataatgcaatgtcatatcagttaaacaatgctcacatagactatactttatatattttaata |
5556796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 5557218 - 5557135
Alignment:
| Q |
4 |
tatgctaaagttcttgtcaaccaattatccaattatatagaggtatatatcttcnnnnnnnncctctcaaaaacaattctttta |
87 |
Q |
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| T |
5557218 |
tatgctaaagttcttgtcaaccaattatccaattatatagaggtatatatcttctattttttcctctcaaaaacaattctttta |
5557135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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