View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_15 (Length: 374)
Name: NF17898_low_15
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 4354860 - 4354500
Alignment:
| Q |
1 |
atatttaaaaaa--gattaaatatgtgtttgatccataaaaaataagtgaatttcagtttcgatcatgttaaatattttcttagaggaaatgttaaatca |
98 |
Q |
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| T |
4354860 |
atatttaaaaaaaggattaaatatgtgtttgatccataaaaaataagtgaatttcagtttcgatcatgttaaa-attttcttagaggaaatgttaaatca |
4354762 |
T |
|
| Q |
99 |
gctttctctaatcctaattaatatgaatcacggcaaacagaatatatgtgacactaaatatatagaagagaaaaaccaaaataaccaaagtagttacata |
198 |
Q |
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| T |
4354761 |
gctttctctaatcctaattaatctgaatcatggcaaacagaatatatgtgacactaaatatatagaagagaaaaaccaaaataaccaaagcagttacata |
4354662 |
T |
|
| Q |
199 |
gactgctacaatagtttgcagtaactaacatctaacataactaaatcataagaagcatacttttgtagtttgtacacccccacgagttcaaggtgggtga |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4354661 |
gactgctacaatagtttgcagtaactaacatctaacataactaaatcataagaagcatacttttgtagtttgtacacccccacaagttcaaggtgggtga |
4354562 |
T |
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| Q |
299 |
ggaaatgaagagagctattagctatcttagcacattgagcttgtttttgagatgaatatatt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4354561 |
ggaaatgaagagagctattagctatcttagcacattgagcttgtttttgagatgaatatatt |
4354500 |
T |
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