View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17898_low_19 (Length: 312)

Name: NF17898_low_19
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17898_low_19
NF17898_low_19
[»] chr1 (3 HSPs)
chr1 (17-173)||(38483406-38483562)
chr1 (17-170)||(1717653-1717809)
chr1 (239-303)||(38483277-38483341)
[»] chr3 (19 HSPs)
chr3 (17-170)||(20015730-20015883)
chr3 (20-170)||(26647437-26647590)
chr3 (25-170)||(17115149-17115294)
chr3 (17-170)||(26653584-26653737)
chr3 (40-170)||(19812719-19812849)
chr3 (25-170)||(19818996-19819141)
chr3 (29-169)||(19951558-19951701)
chr3 (25-170)||(19832305-19832451)
chr3 (17-170)||(19956520-19956673)
chr3 (17-170)||(20046556-20046709)
chr3 (17-170)||(24839503-24839659)
chr3 (17-170)||(19838829-19838982)
chr3 (17-170)||(20036132-20036285)
chr3 (29-170)||(19858505-19858649)
chr3 (17-170)||(26652151-26652307)
chr3 (29-170)||(19853933-19854077)
chr3 (29-170)||(19849432-19849573)
chr3 (17-142)||(19944178-19944306)
chr3 (38-146)||(20033884-20033995)
[»] chr5 (2 HSPs)
chr5 (17-170)||(26354456-26354609)
chr5 (20-170)||(9815470-9815620)
[»] chr8 (3 HSPs)
chr8 (17-158)||(22655845-22655986)
chr8 (17-167)||(22689202-22689355)
chr8 (36-170)||(11544506-11544640)
[»] chr7 (3 HSPs)
chr7 (19-170)||(12495522-12495677)
chr7 (19-170)||(12519326-12519478)
chr7 (19-170)||(12579619-12579773)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 38483562 - 38483406
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38483562 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaagtgcatcattttgat 38483463  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcatatc 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38483462 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcatatc 38483406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 1717809 - 1717653
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttat---ccaaatatttcttaaacggtaccaaaaatgcatcatttt 113  Q
    ||||||| |||||| ||| | ||||||||||||||||||||||| |||||||||| ||   |||||| ||||||||| |||||||||| | |||||| |     
T  1717809 tcaaatccaacaagttcagatactctcaagcatataacaaatgacagcatttgttcatccaccaaatctttcttaaatggtaccaaaatttcatcatatg 1717710  T
Q  114 gataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||||||||  |||| ||||||| ||||||||| |||||||||| ||| ||||||||    
T  1717709 gataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcat 1717653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 38483341 - 38483277
Alignment:
Q  239 gattaataagtaaaaatggttaacttctcttaaaatatgaatgacctcgttataataagaataat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38483341 gattaataagtaaaaatggttaacttctcttaaaatatgaatgacttcgttataataagaataat 38483277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 20015730 - 20015883
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||    
T  20015730 tcaaatccaacaagctcggaaactcttaagcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtacaaaaaatgcatcatttggat 20015829  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||    
T  20015830 aaaacaaatcacacttatcagcatatctgaaatatggacgccaaagaaaatcat 20015883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 26647590 - 26647437
Alignment:
Q  20 aatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatc---caaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||   ||||| ||||||||| |||||| ||| | |||||||| |||    
T  26647590 aatccaacaagctcagaaactctcaagcatataacaaatgagagcatttgttcatcaaccaaatctttcttaaatggtaccgaaatttcatcatttggat 26647491  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||||||  ||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  26647490 aaaacaattcacacttatcagcatatctaacataaggacgccaaagaaaatcat 26647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 17115294 - 17115149
Alignment:
Q  25 aacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaa 124  Q
    |||||||||  ||||||| || |||||||||||||| | ||||| ||||||||||| ||| || || |||||||||| | |||||||| |||||||||      
T  17115294 aacaagctcggaaactctgaaacatataacaaatgacaacatttttttatccaaatcttttttgaatggtaccaaaatttcatcatttggataaaacatt 17115195  T
Q  125 ccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||||||||||| |||||||||  ||||||||| ||||||||||||    
T  17115194 ccacacttatcagcatatctaatgtatggacgccaaagaaaatcat 17115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 26653737 - 26653584
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| ||| ||||||  |||||||||||||||||||||||||||||| | | |||||||||  |||||||| |||||| ||| | ||| |||| |||    
T  26653737 tcaaatccaactagctcagcaactctcaagcatataacaaatgagagcatgtttgtatccaaatccttcttaaatggtacccaaatttcattatttggat 26653638  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||||||  |||||||| | |  |||||||| |||||||||| ||||||||||||    
T  26653637 aaaacattccacacttgttaggatatctaacatatggacgccaaagaaaatcat 26653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 19812849 - 19812719
Alignment:
Q  40 tctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaaccacacttatcatca 139  Q
    |||||||||||||||||||||||||||||  ||||| |||| | | || || |||||| ||| | |||||||| ||||||||||  ||||||||||  ||    
T  19812849 tctcaagcatataacaaatgagagcattttgttatctaaatctattttgaatggtaccgaaatttcatcatttggataaaacaatgcacacttatcggca 19812750  T
Q  140 tatctaaaatatggacgctaaagaaaatcat 170  Q
    ||||||| |||||||||| ||||||||||||    
T  19812749 tatctaacatatggacgccaaagaaaatcat 19812719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 19819141 - 19818996
Alignment:
Q  25 aacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaa 124  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| | |||||||||   ||||||| |||||||||| | |||||||  |||||||||      
T  19819141 aacaagctcagaaactctcaaacatataacaaatgagagaatttttgtatccaaatccatcttaaatggtaccaaaattccatcattcggataaaacagc 19819042  T
Q  125 ccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
     |||||||||||  ||||| || |||||||||| ||||||| ||||    
T  19819041 tcacacttatcagaatatcgaacatatggacgccaaagaaagtcat 19818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 19951701 - 19951558
Alignment:
Q  29 agctcaaaaactctcaagcatataacaaatgagagcatttgtttatcca---aatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaac 125  Q
    |||||| ||||||||||||||||||||||||| | |||||||| |||||   ||| ||||||||| || ||||||| | | |||||  |||||||||  |    
T  19951701 agctcagaaactctcaagcatataacaaatgacaacatttgttgatccaccaaatctttcttaaatggcaccaaaatttcttcattcggataaaacattc 19951602  T
Q  126 cacacttatcatcatatctaaaatatggacgctaaagaaaatca 169  Q
    ||||||||||| ||||||||| |||||||||| ||| |||||||    
T  19951601 cacacttatcagcatatctaacatatggacgccaaataaaatca 19951558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 19832451 - 19832305
Alignment:
Q  25 aacaagctcaaaaactctcaagcatataacaaatgagagcatttgtt-tatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaa 123  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| || |||||||||   ||||||| |||||||||| | |||||||  |||||||||     
T  19832451 aacaagctcagaaactctcaaacatataacaaatgagagaattttttgtatccaaatccatcttaaatggtaccaaaattccatcattcggataaaacag 19832352  T
Q  124 accacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
      |||||||||||  ||||| || |||||||||| ||||||| ||||    
T  19832351 ctcacacttatcagaatatcgaacatatggacgccaaagaaagtcat 19832305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 19956673 - 19956520
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| ||| |||||  |||||||||||||||||||||||||||  |||| | |||||||||  |||||||| |||||||||| | |||||||| |||    
T  19956673 tcaaatccaaccagctcggaaactctcaagcatataacaaatgagataatttttgtatccaaatccttcttaaatggtaccaaaatttcatcatttggat 19956574  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||| |  ||||| |||| |  ||||| || |||||||||| ||||||| ||||    
T  19956573 aaaatagcccacatttatgagaatatcgaacatatggacgccaaagaaagtcat 19956520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 20046709 - 20046556
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| |||||||||| ||||||||| |||||||  |||||| || |||| |||||||||||  |||||||| |||||| ||| | | | |||| |||    
T  20046709 tcaaatccaacaagctcagaaactctcaggcatatagaaaatgaaagtatttttttatccaaatccttcttaaatggtacccaaatttcgttatttggat 20046610  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||| |  |||||||| |||  |||||||| |||||||||| ||||||||||||    
T  20046609 aaaaaattccacacttgtcaggatatctaacatatggacgccaaagaaaatcat 20046556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 24839503 - 24839659
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtt-ta--tccaaatatttcttaaacggtaccaaaaatgcatcatttt 113  Q
    ||||||| ||| |||||| ||||||||||| |||||||||||||||||||||||| ||   |||||| ||||||||| |||||||||  | |||| |||     
T  24839503 tcaaatccaactagctcagaaactctcaagaatataacaaatgagagcatttgttctactaccaaatctttcttaaatggtaccaaagtttcatcctttg 24839602  T
Q  114 gataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||||||||  |||||||||||| |||||  || ||| |||||| ||| ||||||||    
T  24839603 gataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcat 24839659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 19838982 - 19838829
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| |||||||||  ||||||| | |||||||||||||||||  |||| | |||| ||||   ||||||| |||||||||| | |||||||| |||    
T  19838982 tcaaatccaacaagctcggaaactctaaggcatataacaaatgagataatttttgtatctaaatccctcttaaatggtaccaaaatttcatcatttggat 19838883  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||||||   |||||||||||  ||||| || |||||||||| ||||||| ||||    
T  19838882 aaaacagttcacacttatcagaatatcgaacatatggacgccaaagaaagtcat 19838829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 20036132 - 20036285
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| ||| |||||| |||| ||||||||||||||||||||||  |||| | |||||||||| ||| |||| |||||||||  | |||||||| |||    
T  20036132 tcaaatccaaccagctcagaaaccctcaagcatataacaaatgagataatttttgtatccaaatacttcgtaaatggtaccaaagtttcatcatttggat 20036231  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||| ||   || ||||||||  ||||| || |||||||||| ||||||| ||||    
T  20036232 aaagcagttcaaacttatcagaatatcgaacatatggacgccaaagaaagtcat 20036285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 19858649 - 19858505
Alignment:
Q  29 agctcaaaaactctcaagcatataacaaatgagagcatttgtttatc---caaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaac 125  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||   ||||| ||||| | | | |||| ||| | | |||||| |||||||||  |    
T  19858649 agctcagaaactctcaaacatataataaatgagagcatttgtttatcgaccaaatctttctaatatgatacccaaatttcgtcatttggataaaacagtc 19858550  T
Q  126 cacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||||||||||  |||||||||  || |||||| ||| ||||||||    
T  19858549 cacacttatctgcatatctaacgtaaggacgccaaataaaatcat 19858505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 26652307 - 26652151
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttat---ccaaatatttcttaaacggtaccaaaaatgcatcatttt 113  Q
    ||||||| ||| |||||| |||||||  ||||| |||||||||||||||||||| |||   |||||| ||||||||| |||||||||  | | ||||||     
T  26652307 tcaaatccaactagctcagaaactctttagcatttaacaaatgagagcatttgtatatccaccaaatctttcttaaatggtaccaaagttccgtcatttg 26652208  T
Q  114 gataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||||||||   ||||||||||  |||| | || ||| |||||| ||| ||||||||    
T  26652207 gataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaatcat 26652151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 19854077 - 19853933
Alignment:
Q  29 agctcaaaaactctcaagcatataacaaatgagagcatttgtttat---ccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaac 125  Q
    |||||| |||||||||||||| | |||||| |||||||||||||||   ||||||  |||||||| ||||||  || | |||||||  | |||||||  |    
T  19854077 agctcagaaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccgaatttcatcattcgggtaaaacattc 19853978  T
Q  126 cacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||||||||| | |||| |||| ||| |||||| ||| ||||||||    
T  19853977 cacacttatgagcatagctaacataaggacgccaaataaaatcat 19853933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 19849573 - 19849432
Alignment:
Q  29 agctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaaccac 128  Q
    |||||| |||||||||| ||| |||||||||| || |||| ||||||  ||| ||||| ||||   ||| ||| | |||||||| |||||||||  |||     
T  19849573 agctcagaaactctcaaacatgtaacaaatgaaagtatttctttatctgaatctttctcaaacaacacccaaattccatcatttggataaaacattccat 19849474  T
Q  129 acttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    | |||| | ||||||||  |||||||||| ||||||||||||    
T  19849473 aattatgagcatatctagcatatggacgccaaagaaaatcat 19849432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 19944306 - 19944178
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtt-ta--tccaaatatttcttaaacggtaccaaaaatgcatcatttt 113  Q
    ||||||| ||| |||||  ||||||||||| |||||||||||||||||||||||| ||   |||||| ||| ||||| |||||||||  | ||||||||     
T  19944306 tcaaatccaactagctcggaaactctcaagaatataacaaatgagagcatttgttctactaccaaatcttttttaaatggtaccaaagtttcatcatttg 19944207  T
Q  114 gataaaacaaaccacacttatcatcatat 142  Q
    ||||| | |  |||||||||||| |||||    
T  19944206 gataatatactccacacttatcagcatat 19944178  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 20033884 - 20033995
Alignment:
Q  38 actctcaagcatataacaaatgagagcatttgtttat---ccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaaccacacttat 134  Q
    ||||||| ||||||||||||||| |||||||||| ||   ||||||  |||||||| |||||  ||| | |||||||  |||||||||  | ||||||||    
T  20033884 actctcatgcatataacaaatgacagcatttgttgatccaccaaatcattcttaaatggtactgaaatttcatcattcggataaaacagtctacacttat 20033983  T
Q  135 catcatatctaa 146  Q
    || |||||||||    
T  20033984 cagcatatctaa 20033995  T

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Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 26354456 - 26354609
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||| |||    
T  26354456 tcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtaccgaaattgcatcatttggat 26354555  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    |||| | |||||| | |||  |||||||||||||||||||| ||||||||||||    
T  26354556 aaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat 26354609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 9815620 - 9815470
Alignment:
Q  20 aatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaa 119  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||  ||||||||| ||||||    
T  9815620 aatccaacaagctcggaaactctcaagcatataacaaatgagagcattagcttatccaaatctttcttaaatggtaccaaaagcgcatcatttggataaa 9815521  T
Q  120 acaaaccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||| ||| || |||||| |||||||||||||||||||| ||||||||||||    
T  9815520 acacaccgcagttatcagcatatctaaaatatggacgccaaagaaaatcat 9815470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 22655845 - 22655986
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgat 116  Q
    ||||||| |||||||||| |||| ||||| |||| |||||||||||| |||| | |||||||||  |||||||| |||||||||| | |||||||  |||    
T  22655845 tcaaatccaacaagctcagaaaccctcaaacatacaacaaatgagagaatttttgtatccaaatccttcttaaatggtaccaaaatttcatcattaggat 22655944  T
Q  117 aaaacaaaccacacttatcatcatatctaaaatatggacgct 158  Q
    ||||||   | |||||||||  ||||| || |||||||||||    
T  22655945 aaaacagctcgcacttatcagaatatcgaacatatggacgct 22655986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 22689202 - 22689355
Alignment:
Q  17 tcaaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttat---ccaaatatttcttaaacggtaccaaaaatgcatcatttt 113  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||| | |||||||||||   |||||| |||| |  |||| ||  ||| | |||| |||     
T  22689202 tcaaatccaactagctcagaaactctcaagcatataacaaatgacaacatttgtttatccgccaaatctttcatcgacggcacacaaatttcatcctttg 22689301  T
Q  114 gataaaacaaaccacacttatcatcatatctaaaatatggacgctaaagaaaat 167  Q
    |||||||||  |||||||||||| ||||||||| ||| |||||| ||| |||||    
T  22689302 gataaaacactccacacttatcagcatatctaacataaggacgccaaataaaat 22689355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 11544640 - 11544506
Alignment:
Q  36 aaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataaaacaaaccacacttatc 135  Q
    ||||||||||  | ||||||||||||||  ||| |||||||||||  ||||||| ||||||||||  | |||||||| |||||||||   || |||||||    
T  11544640 aaactctcaatgacataacaaatgagagattttttttatccaaatccttcttaagcggtaccaaagtttcatcatttggataaaacatttcaaacttatc 11544541  T
Q  136 atcatatctaaaatatggacgctaaagaaaatcat 170  Q
      |||||  || |||||| ||| ||||||||||||    
T  11544540 ggcatattgaacatatgggcgccaaagaaaatcat 11544506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 12495522 - 12495677
Alignment:
Q  19 aaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataa 118  Q
    ||||| ||||||||||||| ||||||||||||||  |||| | || |||| |||||||||||  |||||||| |||||| ||| | ||| |||| |||||    
T  12495522 aaatccaacaagctcaaaatctctcaagcatatagaaaatcaaagtatttttttatccaaatccttcttaaatggtacccaaatttcattatttggataa 12495621  T
Q  119 aacaaa----ccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    || |||    |||||||| |||  |||||||  |||||||||| ||||||||||||    
T  12495622 aaaaaaaattccacacttctcaggatatctagcatatggacgccaaagaaaatcat 12495677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 12519326 - 12519478
Alignment:
Q  19 aaatctaacaagctcaaaaactctcaagcatataacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgataa 118  Q
    ||||| ||||| ||||||| ||||||||||||||  |||| | || |||| |||||||||||  |||||||| |||||| ||| | ||| |||| |||||    
T  12519326 aaatccaacaacctcaaaatctctcaagcatatagaaaatcaaagtatttttttatccaaatccttcttaaatggtacccaaatttcattatttggataa 12519425  T
Q  119 aacaaa--ccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    || |||  |||||||| |||  |||||||  |||||||||| ||||||||||||    
T  12519426 aaaaaattccacacttctcaggatatctagcatatggacgc-aaagaaaatcat 12519478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 12579619 - 12579773
Alignment:
Q  19 aaatctaacaagctcaaaaactctcaagcatataacaaatgagagca-tttgtttatccaaatatttcttaaacggtaccaaaaatgcatcattttgata 117  Q
    ||||| ||||||||||||| ||||||||||||||  |||| | || | ||| |||||||||||  |||||||| |||||| ||| | ||| |||| ||||    
T  12579619 aaatccaacaagctcaaaatctctcaagcatatagaaaatcaaagtattttttttatccaaatccttcttaaatggtacccaaatttcattatttggata 12579718  T
Q  118 aaacaaa--ccacacttatcatcatatctaaaatatggacgctaaagaaaatcat 170  Q
    ||| |||  |||||||| | |  |||||||  |||||||||  ||||||||||||    
T  12579719 aaagaaattccacacttcttaggatatctagcatatggacgtcaaagaaaatcat 12579773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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