View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17898_low_20 (Length: 310)
Name: NF17898_low_20
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_20 |
 | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 19392582 - 19392306
Alignment:
| Q |
19 |
ataatcgttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
19392582 |
ataatcgttgagatcaagttttgtaactcttcaggtagtgttgtcacaatggacaccttcccaagcacaacaatctttttttgttgtccacattgatatc |
19392483 |
T |
|
| Q |
119 |
cgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19392482 |
cgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccacggtgtgattgatgcacatgcttttgt |
19392383 |
T |
|
| Q |
219 |
ataatgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19392382 |
ataatgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
19392306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 19460949 - 19460680
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||| |||| ||| || |||||||||||| |
|
|
| T |
19460949 |
ttgagatcaagttttgtaactcttccagtaatgttgtcacagtggactccttcccaagcacaacaatctatttcggttgaccatgttaatatccgaccaa |
19460850 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgt |
225 |
Q |
| |
|
|| | | |||||| |||| |||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| |||||| ||||||||| ||||| |
|
|
| T |
19460849 |
gagtgtcattgattccttatttgaaggttaagagtgtctctcgatctttctcattgcatccaaccactgtgtgattgctgcacaagcttttgtagaatgt |
19460750 |
T |
|
| Q |
226 |
gattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
| ||||| ||||||||| | ||||||||||||||| || || |||||||||| |||||| |||||||||| |
|
|
| T |
19460749 |
ggttatagataaaagtaaaagcaaaagaagtgaaatttgtgtagtaagaatggtcatcatgaatgattgt |
19460680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 27 - 295
Target Start/End: Complemental strand, 18115381 - 18115113
Alignment:
| Q |
27 |
tgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaag |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||| |||| |||| || ||||||||||||| |
|
|
| T |
18115381 |
tgagatcaagttttgtaactcttccggtaatgttctcacagtggactccttcccaagcacaacaatctatttcggttgaccacgttaatatccgaccaag |
18115282 |
T |
|
| Q |
127 |
attataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtg |
226 |
Q |
| |
|
| | | |||||| |||| |||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| |||||| |
|
|
| T |
18115281 |
agtgtcattgattccttttttgaaggttaagagtgtctctcgatctttctcattgcatccaaccactgtgtgattgctgcacgagcttttgtagaatgtg |
18115182 |
T |
|
| Q |
227 |
attataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| || || |||||||||| |||||| |||||||||| |
|
|
| T |
18115181 |
gttatagataaaagtaaaagcaaaagaagtgaaatttgtgtagtaagaatggtcatcatgaatgattgt |
18115113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 19436313 - 19436061
Alignment:
| Q |
31 |
atcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagatta |
130 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |||| |||| ||||||||||||||| | || |
|
|
| T |
19436313 |
atcaagttttgtaactcttccggtaatgttgtcacagtggacacctctccaagcacaacaatctttttcggttgaccacgttgatatccgaccaaaacta |
19436214 |
T |
|
| Q |
131 |
taattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgatta |
230 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||| |||||||| |||||| ||||| ||| |
|
|
| T |
19436213 |
tcattgatgccttgtttgaaggttaacagtgtctcttgatctttctcattgcatcgaaccactgtgtgattgctgcacatggttttgtggaatgttgtta |
19436114 |
T |
|
| Q |
231 |
taaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatc |
283 |
Q |
| |
|
|| ||||||||||| |||||| ||||| | || ||||||||||||| ||||| |
|
|
| T |
19436113 |
tagataaaagtagaagcaaaaagagtgacatttgtgaagtaagaatggtcatc |
19436061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 17941183 - 17940918
Alignment:
| Q |
25 |
gttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgacca |
124 |
Q |
| |
|
||||||||||| |||||||||||| ||| | ||||||||| |||| |||||||||||||||||||| |||| |||| ||||||| |||||| |
|
|
| T |
17941183 |
gttgagatcaacttttgtaactctgtttgtaatattgtcacaaaggactccttcccaagcacaacaatcatttttggttgaccacgttgatattcgacca |
17941084 |
T |
|
| Q |
125 |
agattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatg |
224 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| | ||||||||| |||||||| |||||| |||| |
|
|
| T |
17941083 |
agactatcattgatgccatgtttgaaggttaatagtgtctcgcgatctttctcattgcattgaacaactgtgtgattgctgcacatggttttgtggaatg |
17940984 |
T |
|
| Q |
225 |
tgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatg |
290 |
Q |
| |
|
|| ||||||||||||||||| |||||| ||| || | || ||||||||||||| |||||| ||||| |
|
|
| T |
17940983 |
tggttataaataaaagtagaagcaaaaaaagggacatttgtgaagtaagaatggtcatcatgaatg |
17940918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 57 - 295
Target Start/End: Complemental strand, 19399130 - 19398892
Alignment:
| Q |
57 |
tgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaa |
156 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
19399130 |
tgttgtcacaatagactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagtttaa |
19399031 |
T |
|
| Q |
157 |
cagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagt |
256 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| | ||||||||| | |||||| |||||| ||| | ||||| ||||||||| | ||||||||||| |
|
|
| T |
19399030 |
cagtgtctctcgatctttctcattgcatcgaacaactgtgtgattggtacacatggttttgtggaatatagttatagataaaagtataagcaaaagaagt |
19398931 |
T |
|
| Q |
257 |
gaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
|||| || || |||||||||| |||||| |||| ||||| |
|
|
| T |
19398930 |
gaaatttgtgtagtaagaatggtcatcatgaataattgt |
19398892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 19413616 - 19413347
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| || ||||| ||||||||| |||||||||| |||| |||| ||||||||| ||||| |
|
|
| T |
19413616 |
ttgagatcaatttttgtaactcttccggtaatgttgtcgcagtggactccttcccaaccacaacaatctttttcggttgaccacgttgatatccaaccaa |
19413517 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgt |
225 |
Q |
| |
|
|| ||| | |||| || || |||||||||||||||||||||||||| |||||||| ||| |||| | ||| ||||| |||||||| |||||| ||| | |
|
|
| T |
19413516 |
gactatcagtgataccctggttgaaggttaacagtgtctctcgatcattctcattgcatcgaacaactgtgggattgttgcacatggttttgtggaatat |
19413417 |
T |
|
| Q |
226 |
gattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
| |||| ||||||||||| ||||||||||||| | || ||||| ||||||| |||||| |||| ||||| |
|
|
| T |
19413416 |
ggttattgataaaagtagaagcaaaagaagtgacatttgtgaaggaagaatggtcatcacgaataattgt |
19413347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 19350846 - 19350580
Alignment:
| Q |
27 |
tgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaag |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| || ||||| || ||||| |||||| ||| ||| ||| ||||||||| ||||| |
|
|
| T |
19350846 |
tgagatcaagttttgtaactcttccagtaatattgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttgatatccaaccaaa |
19350747 |
T |
|
| Q |
127 |
attataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtg |
226 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||| |||||||| |||||||||||| |||||||||| ||||||||| |||||||| |||||| |||||| |
|
|
| T |
19350746 |
attatcattgatgccatgtttaaaggttaacaatgtctctctatctttctcattgcattgaaccaatgtgtgattggtgcacatggttttgtggaatgtg |
19350647 |
T |
|
| Q |
227 |
attataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgatt |
293 |
Q |
| |
|
||||| ||||||||| | ||||||||||||| | || || |||||||||| ||||| |||||||| |
|
|
| T |
19350646 |
gttatagataaaagtataagcaaaagaagtgagatttgtgtagtaagaatggccatcatgaatgatt |
19350580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 18102862 - 18102649
Alignment:
| Q |
44 |
actcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatgcctt |
143 |
Q |
| |
|
||||| |||||| |||||||||| ||||| ||||||||||||||| |||| |||| |||| |||| |||||||||| | ||| ||||||||| | |
|
|
| T |
18102862 |
actctcccggtaatgttgtcacagtggactccttcccaagcacaaaaatcttttttggttgaccacgttgaaatccgaccaaaactatcattgatgccat |
18102763 |
T |
|
| Q |
144 |
gtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtag |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
18102762 |
gtttgaaggttaacagtgtctcatgatctttctcattgcatcgaaccactgtgtgattggtgcacatgcttttgtggaatgtggttaccgataaaagtag |
18102663 |
T |
|
| Q |
244 |
atgcaaaagaagtg |
257 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
18102662 |
aagtaaaagaagtg |
18102649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 19333414 - 19333145
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| || |||| |||||||| | |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
19333414 |
ttgagatcaagttctgtaactcttccggtaatgttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgatatccgaccaa |
19333315 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgt |
225 |
Q |
| |
|
|| ||| || |||||| ||| |||| ||||||| ||||||||||||||||||||| || |||| | ||||||||| | |||||| |||||| ||||| |
|
|
| T |
19333314 |
gactatcatggatgccctgtctgaacgttaacaatgtctctcgatctttctcattgcagcgaacaactgtgtgattgctacacatggttttgtggaatgt |
19333215 |
T |
|
| Q |
226 |
gattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| || || |||||||||| |||||| |||| ||||| |
|
|
| T |
19333214 |
agttatagataaaagtgtaagcaaaagaagtgaaatttgtgtagtaagaatggtcatcatgaataattgt |
19333145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 19380320 - 19380050
Alignment:
| Q |
25 |
gttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgacca |
124 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||| |||| |||| |||| ||| |||| |
|
|
| T |
19380320 |
gttgagatcaatttttgtaactcttctggtaatgttgtcacagtggacacctttccaagcacaacaatcattttcagttgaccacgttgaaatcgtacca |
19380221 |
T |
|
| Q |
125 |
agattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatg |
224 |
Q |
| |
|
||| ||| |||||| || ||||| |||||||| ||| ||||| ||||||||||||||||| |||||| ||||||||| |||| |||| ||||| |||| |
|
|
| T |
19380220 |
agactatcattgattccctgtttaaaggttaagagtatctctagatctttctcattacatcgaaccactgtgtgattgctgcatatgcatttgtggaatg |
19380121 |
T |
|
| Q |
225 |
tgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
|| ||||| | | || |||| | |||| |||||| | || || ||||||||| |||||| |||| ||||| |
|
|
| T |
19380120 |
tggttatagaaagaaatagaagtaaaataagtgacatttgtgtagtaagaattgtcatcatgaataattgt |
19380050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 293
Target Start/End: Original strand, 24493994 - 24494247
Alignment:
| Q |
40 |
tgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatg |
139 |
Q |
| |
|
||||||||| || ||| |||||||||| ||||| |||| ||| ||||||||||| |||| ||| |||| ||| |||||||| ||| || |||| |
|
|
| T |
24493994 |
tgtaactctgccagtaatgttgtcacattggactcctttccatgcacaacaatcttttacggttgaccatgttgaaatcagaccaagactatcatcgatg |
24494093 |
T |
|
| Q |
140 |
ccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaa |
239 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||| | |||||||||| |||| |||||| |||| |||||| |
|
|
| T |
24494094 |
ctttgtttgaaggctaacagtgtctctcgatctttctcattgcatgaaaccaatgtgtgatggctgcacatgctcttgtggaatgtggttatggataaaa |
24494193 |
T |
|
| Q |
240 |
gtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgatt |
293 |
Q |
| |
|
||||| |||||||||||| | || |||||||||||| |||||| |||||||| |
|
|
| T |
24494194 |
gtagaagcaaaagaagtggcaattgcgaagtaagaatggtcatcatgaatgatt |
24494247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 25462486 - 25462223
Alignment:
| Q |
28 |
gagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaaga |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||| | ||||||||| ||| ||||||| |
|
|
| T |
25462486 |
gagatcaagttttgtaactcgtccggtaatgttgtcacagacgacaccttcccatgcacaacaatctttttcaga---ccacattgaaatcataccaaga |
25462390 |
T |
|
| Q |
128 |
ttataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtga |
227 |
Q |
| |
|
| | ||||||||| ||||||||||||||||||||||| || ||||||||||| ||| |||||| ||||||||| ||||||||||||||| || ||| |
|
|
| T |
25462389 |
ctgtcattgatgccatgtttgaaggttaacagtgtctcacggtctttctcattgcatcgaaccacagtgtgattgttgcacatgcttttgtggaacgtgg |
25462290 |
T |
|
| Q |
228 |
ttataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattg |
294 |
Q |
| |
|
|||| | ||||||||| | |||| ||||| | || || |||||||||| |||||| ||||||||| |
|
|
| T |
25462289 |
ttattgaaaaaagtagaagtaaaattagtgacatttgtgtagtaagaatggtcatcatgaatgattg |
25462223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 18022220 - 18022038
Alignment:
| Q |
101 |
gttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgat |
200 |
Q |
| |
|
|||| |||| |||||||||||| |||| ||| |||||| || |||| ||| |||| ||||||||||||||||| ||||| ||||| |||| |||| || |
|
|
| T |
18022220 |
gttgaccactttgatatccgactaagactatcattgattccacgtttaaagtttaagagtgtctctcgatctttttcattgcattgcaccactgtgtaat |
18022121 |
T |
|
| Q |
201 |
tgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatc |
283 |
Q |
| |
|
|| |||||||| |||||| |||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18022120 |
tgctgcacatggttttgtggaatgtggttattgataaaagtagaagcaaaagaagtgaaatttttgaagtaagaatgatcatc |
18022038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 283
Target Start/End: Original strand, 14896954 - 14897206
Alignment:
| Q |
28 |
gagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaaga |
127 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||||| | ||| |||||||||||||||| | |
|
|
| T |
14896954 |
gagatcaagttttgtaactctttcagtagtgttgtcgcagtggactccttcccaagcacaacaatctttttcgga---ccatattgatatccgaccaaaa |
14897050 |
T |
|
| Q |
128 |
ttataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtga |
227 |
Q |
| |
|
||| || |||||||||||||||| |||||| | |||| |||||||||||||| |||||||||| ||||| ||| |||||||| |||||| ||||| |
|
|
| T |
14897051 |
gtatcatggatgccttgtttgaagtttaacaatatctcacgatctttctcattgcattgaaccacggtgtggttgctgcacatggttttgtggaatgtag |
14897150 |
T |
|
| Q |
228 |
ttataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatc |
283 |
Q |
| |
|
||||| ||||||| | | ||||| ||||| | || ||||||||||||| ||||| |
|
|
| T |
14897151 |
ttatagataaaagcataaacaaaaaaagtgtcatttgtgaagtaagaatggtcatc |
14897206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 18146269 - 18146005
Alignment:
| Q |
25 |
gttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgacca |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||| |||| |||| |||| |||||||||| |||| |||| |||| ||||||||| |
|
|
| T |
18146269 |
gttgagatcaagttttgtaactctgtttgtaatattgtcacaaaggactcctttccaaacacaacaatctttttcagttgaccacgttgaaatccgacca |
18146170 |
T |
|
| Q |
125 |
agattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatg |
224 |
Q |
| |
|
| | ||| ||||||||| | |||||||||| |||||||||| ||||||||||||| ||| ||| || ||||||||| ||||||||||||||| |||| |
|
|
| T |
18146169 |
aaactatcattgatgccctttttgaaggttgacagtgtctcatgatctttctcattgcatcgaaaaattgtgtgattgctgcacatgcttttgtggaatg |
18146070 |
T |
|
| Q |
225 |
tgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
|| ||||||||| || ||||||||| ||| | || |||||||||||| |||||| |||||||||| |
|
|
| T |
18146069 |
tggttataaatataa------gcaaaagaaatgatatttgtgaagtaagaatagtcatcatgaatgattgt |
18146005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 18164579 - 18164326
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| || ||||| |||||||| |||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
18164579 |
ttgagatcaatttttgtaactcttccggtaatgttgtcgcagtggactccttcccatacacaacaatctttttcggttgaccacgttgatatccgaccaa |
18164480 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgt |
225 |
Q |
| |
|
| ||| ||||||||| ||| |||| ||||||| ||||||||||||||| ||||| ||| || | ||||||||| ||||||||||||||| ||| |
|
|
| T |
18164479 |
aactatcattgatgccgtgtctgaacgttaacaatgtctctcgatctttttcattgcatcga---gtggtgtgattgctgcacatgcttttgtcgaatcg |
18164383 |
T |
|
| Q |
226 |
gattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcat |
282 |
Q |
| |
|
| ||| | ||||||| ||| |||||| || ||| | ||||| |||||||||| |||| |
|
|
| T |
18164382 |
ggttacatataaaagaagaagcaaaataaatgacatttttggagtaagaatggtcat |
18164326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 17728263 - 17728534
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||| || |
|
|
| T |
17728263 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaaccacgatgatatccgaacag |
17728362 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtg---attgatgcacatgcttttgtataa |
222 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||| ||| |||||| ||||| |||| | | |||||||| || || |
|
|
| T |
17728363 |
agctagcattgatgccttgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttagaa |
17728462 |
T |
|
| Q |
223 |
tgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattg |
294 |
Q |
| |
|
|||| ||||| |||| | |||| ||||||||||||| | || || ||||| |||| |||| | ||||||||| |
|
|
| T |
17728463 |
tgtggttatagataagattagaagcaaaagaagtgacatttgtgtagtaaaaatggtcatgaggaatgattg |
17728534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 19029492 - 19029763
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||| || |
|
|
| T |
19029492 |
ttgagatcaagttctgtaactcttccagtaatgttgtcacagtggacaccttcccaagcacaacaattttgttgagttaaccacgatgatatccgaacag |
19029591 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtg---attgatgcacatgcttttgtataa |
222 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||| ||| |||||| ||||| |||| | | |||||||| || || |
|
|
| T |
19029592 |
agctagcattgatgccttgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttagaa |
19029691 |
T |
|
| Q |
223 |
tgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattg |
294 |
Q |
| |
|
|||| ||||| |||| | |||| ||||||||||||| | || || ||||| |||| |||| | ||||||||| |
|
|
| T |
19029692 |
tgtggttatagataagattagaagcaaaagaagtgacatttgtgtagtaaaaatggtcatgaggaatgattg |
19029763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 19354244 - 19354031
Alignment:
| Q |
59 |
ttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaaca |
158 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||| || | ||||||||| ||| ||||||| ||| |||||| || ||||| |||||||||| |
|
|
| T |
19354244 |
ttgtcacagtggacttcttcccaagaacaacaatctttttcagtcgaccacattgaaatcataccaagactatcattgattccctgtttaaaggttaaca |
19354145 |
T |
|
| Q |
159 |
gtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagtga |
258 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||||| |||||| ||||| |||||| ||||| |||||| |||| |||||||||||| |
|
|
| T |
19354144 |
atgtctctcgatctttctcattgcatcgaaccatagtgtgattgttgcaca----tttgtggaatgtggttatagataaaaatagaaacaaaagaagtga |
19354049 |
T |
|
| Q |
259 |
aacttttgaagtaagaat |
276 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
19354048 |
aatttgtgtagtaagaat |
19354031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 18015514 - 18015339
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
|||||||||| || | ||||||| || ||| |||||||||| ||||| |||||||||| ||||||||| || | |||| |||| ||| ||||| |
|
|
| T |
18015514 |
ttgagatcaatttctataactctaccagtaatgttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttgaaatcataccaa |
18015415 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgatt |
201 |
Q |
| |
|
| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
18015414 |
aactatcattgattccttgtttgaaggttaacagtgtctctcgatctttctcattgcatcgaaccaatgtgtgatt |
18015339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 16676624 - 16676389
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || ||||| |||||||| ||||||| || |||| ||| |||||||||||| || |
|
|
| T |
16676624 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaa |
16676525 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtg---attgatgcacatgcttttgtataa |
222 |
Q |
| |
|
| || |||||||||||||||||||||||||| ||||| | |||| |||||||| ||| ||||| |||| |||| | | |||||||||| || |
|
|
| T |
16676524 |
aactaccattgatgccttgtttgaaggttaacaatgtcttttgatccttctcattgcatctaaccaatctgtgatcattgctagatatgcttttgtggaa |
16676425 |
T |
|
| Q |
223 |
tgtgattataaataaaagtagatgcaaaagaagtga |
258 |
Q |
| |
|
|||| ||| ||||||||||||| |||||| |||||| |
|
|
| T |
16676424 |
tgtggttacaaataaaagtagaagcaaaataagtga |
16676389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 19375111 - 19374842
Alignment:
| Q |
26 |
ttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaa |
125 |
Q |
| |
|
|||||||||| || ||||||||| | ||| |||||||||| | ||| |||||||||| ||||||||| | | |||| ||| ||| ||||| |
|
|
| T |
19375111 |
ttgagatcaatttctgtaactctactagtaatgttgtcacagtagactccttcccaagaacaacaatctttttcaatcgaccacgatgaaatcataccaa |
19375012 |
T |
|
| Q |
126 |
gattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgt |
225 |
Q |
| |
|
| ||| |||||| || | |||||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||| |||||| |||||| ||||| |
|
|
| T |
19375011 |
aactatcattgattccctctttgaaggttaatagtgtctctcgatctttctcattgcatcgaaccaatgtgtgattgctgcacaccgttttgtggaatgt |
19374912 |
T |
|
| Q |
226 |
gattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
| ||||| ||||||||| | ||||||||||||||| || || ||||| |||| |||| | |||| ||||| |
|
|
| T |
19374911 |
ggttatagataaaagtataagcaaaagaagtgaaatttgtgtagtaaaaatggtcatgatgaataattgt |
19374842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 295
Target Start/End: Complemental strand, 18107865 - 18107597
Alignment:
| Q |
27 |
tgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaag |
126 |
Q |
| |
|
||||||||| || ||||||||||||| || |||||||||| ||||| ||||||| |||||||||| |||| |||| |||| | | | ||| |
|
|
| T |
18107865 |
tgagatcaatttctgtaactcttccgataatgttgtcacagtggacttcttcccatacacaacaatctttttcggttgaccaccttgaaaacatgctaag |
18107766 |
T |
|
| Q |
127 |
attataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtg |
226 |
Q |
| |
|
| ||| ||||||||| |||||||||||||| ||| | ||| ||||||||||||| ||| |||||| ||||||||| ||||||||| ||||| |||||| |
|
|
| T |
18107765 |
actattattgatgccatgtttgaaggttaagagtatatctagatctttctcattgcatcgaaccactgtgtgattgctgcacatgcatttgtggaatgtg |
18107666 |
T |
|
| Q |
227 |
attataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
||||| | | || |||| | |||| |||||| | || || ||||||||| |||||| |||| ||||| |
|
|
| T |
18107665 |
gttatagaaagaaatagaagtaaaataagtgacatttgtgtagtaagaattgtcatcatgaataattgt |
18107597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 295
Target Start/End: Complemental strand, 18143712 - 18143452
Alignment:
| Q |
32 |
tcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattat |
131 |
Q |
| |
|
||||||||||||||||||| | || ||||||| || | ||| |||||||| | ||||||| |||| ||| ||||||| |||||||| ||| |
|
|
| T |
18143712 |
tcaagttttgtaactcttctgctaatgttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgatatttgaccaagactat |
18143613 |
T |
|
| Q |
132 |
aattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattat |
231 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||| ||||||||| || ||| |||| ||||||||| |||||||| |||||| |||||| |||| |
|
|
| T |
18143612 |
cattgatgccccatttgaagcttaacaatgtctctcaatctttctcgttgcatcgaact---gtgtgattgctgcacatggttttgtggaatgtggttat |
18143516 |
T |
|
| Q |
232 |
aaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
||| ||||| | ||||||||||||| | || ||||||||||||| |||||| |||| ||||| |
|
|
| T |
18143515 |
tgatagaagtataagcaaaagaagtgacatttgtgaagtaagaatggtcatcatgaataattgt |
18143452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 289
Target Start/End: Complemental strand, 19419395 - 19419146
Alignment:
| Q |
40 |
tgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatg |
139 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||| |||||||||| | || |||| |||| | | | | |||| ||| ||||||| |
|
|
| T |
19419395 |
tgtaactcttccggtaatgttgtcacagtggactccttcccatacacaacaatctttttctgctgaccaccttgaaaacaggctaagactattattgatg |
19419296 |
T |
|
| Q |
140 |
ccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaa |
239 |
Q |
| |
|
|| |||||||||||||| ||| ||||| ||||||||||||| ||| ||||||| ||||||| ||||||||| | || |||||| ||||| | |||| |
|
|
| T |
19419295 |
ccctgtttgaaggttaagagtatctctagatctttctcattgcatcgaaccattgtgtgatatctgcacatgcatatgcggaatgtggttatagaaaaaa |
19419196 |
T |
|
| Q |
240 |
gtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaat |
289 |
Q |
| |
|
|||| | |||| |||||| | || || ||||||||| |||||| |||| |
|
|
| T |
19419195 |
atagaagtaaaataagtgacatttgtgtagtaagaattgtcatcatgaat |
19419146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 18015340 - 18015220
Alignment:
| Q |
173 |
ttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaa |
272 |
Q |
| |
|
|||||||| ||| |||||| ||||||||| |||||||| || ||| |||||| ||||| ||||||| ||| | ||||||||||| | || || ||| | |
|
|
| T |
18015340 |
ttctcattgcatcgaaccaatgtgtgattgctgcacatggttatgtggaatgtggttatagataaaaggagaaggaaaagaagtgacatttgtgtagtta |
18015241 |
T |
|
| Q |
273 |
gaatgatcatcaagaatgatt |
293 |
Q |
| |
|
||||| ||||| |||||||| |
|
|
| T |
18015240 |
gaatggccatcatgaatgatt |
18015220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 27 - 295
Target Start/End: Complemental strand, 15531800 - 15531532
Alignment:
| Q |
27 |
tgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaag |
126 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | | ||||||||| |||||||||| |
|
|
| T |
15531800 |
tgaggtcaagttttgtaactcttccggtcatgttgtcacaatggactcctccccaagcacaacaatttttttcaatagaccacattgaaatccgaccaaa |
15531701 |
T |
|
| Q |
127 |
attataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtg |
226 |
Q |
| |
|
| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| |||||| |
|
|
| T |
15531700 |
actatcattgacaccctgtttgaaggttaacagtgtctctcgatctttctcattacattgaacaaatgtgttattggtgcacatgcttttgtggaatgtg |
15531601 |
T |
|
| Q |
227 |
attataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
| ||| ||||||||| | ||| |||||||| | || ||||||||||||| |||| | ||| |||||| |
|
|
| T |
15531600 |
gtaatacataaaagtaaaaccaatagaagtgacatttgtgaagtaagaatggtcattatgaaggattgt |
15531532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 13667466 - 13667656
Alignment:
| Q |
29 |
agatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagat |
128 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
13667466 |
agattaagttttgtaactcttccggtaatgttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgatatccgaccaagag |
13667565 |
T |
|
| Q |
129 |
tataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgta |
219 |
Q |
| |
|
| | ||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
13667566 |
tgtcattgactccctgtttgaaggttaagagtgtctctcgatctttctcattgcattgaaccaatgtgtgattgttgcacatggttttgta |
13667656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 8458924 - 8458654
Alignment:
| Q |
25 |
gttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgacca |
124 |
Q |
| |
|
|||||||||||||||||||||||| || ||| || ||||||| ||||| |||| ||| ||||||||||| |||| |||| ||||||| |||| |
|
|
| T |
8458924 |
gttgagatcaagttttgtaactctgccagtaatgctgtcacagtggactcctttccacgcacaacaatctttttcagttgaccacgttgatattatacca |
8458825 |
T |
|
| Q |
125 |
agattataattgatgccttgtttgaaggttaacagtgtctctcgatctttctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatg |
224 |
Q |
| |
|
|| ||| ||||| ||| |||||||||||||||| ||| | ||| || |||||||| ||| || || ||||| ||| ||||||||||||||| |||| |
|
|
| T |
8458824 |
cgactatcattgaggccctgtttgaaggttaacattgtttgtcggtcattctcattgcatgaaaacaatgtgtggttgctgcacatgcttttgtggaatg |
8458725 |
T |
|
| Q |
225 |
tgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaagaatgatcatcaagaatgattgt |
295 |
Q |
| |
|
|| ||| | |||| |||||| ||||||||| ||| | || |||| ||||||| |||||| ||| |||||| |
|
|
| T |
8458724 |
tggttacagataacagtagaagcaaaagaattgacatttgtgaaacaagaatggtcatcatgaaagattgt |
8458654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 282
Target Start/End: Original strand, 540 - 748
Alignment:
| Q |
74 |
ccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcgatctt |
173 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| ||||||||| ||||||| ||| ||||||| | |||||||||||||||| |||||| ||||||| |
|
|
| T |
540 |
ccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacgatctt |
639 |
T |
|
| Q |
174 |
tctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaag |
273 |
Q |
| |
|
||||||| ||| ||||| ||||||||| |||| || |||||| |||||| ||| | ||||||||||| | ||||||| ||| | || || |||||| |
|
|
| T |
640 |
tctcattgcatctaaccacagtgtgattggtgcaagtgattttgtgaaatgtggttacatataaaagtagaagaaaaagaaatgatatttgtgtagtaag |
739 |
T |
|
| Q |
274 |
aatgatcat |
282 |
Q |
| |
|
|||| |||| |
|
|
| T |
740 |
aatggtcat |
748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 282
Target Start/End: Complemental strand, 4790 - 4582
Alignment:
| Q |
74 |
ccttcccaagcacaacaatcnnnnnnngttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcgatctt |
173 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| ||||||||| ||||||| ||| ||||||| | |||||||||||||||| |||||| ||||||| |
|
|
| T |
4790 |
ccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacgatctt |
4691 |
T |
|
| Q |
174 |
tctcattacattgaaccatcgtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagtgaaacttttgaagtaag |
273 |
Q |
| |
|
||||||| ||| ||||| ||||||||| |||| || |||||| |||||| ||| | ||||||||||| | ||||||| ||| | || || |||||| |
|
|
| T |
4690 |
tctcattgcatctaaccacagtgtgattggtgcaagtgattttgtgaaatgtggttacatataaaagtagaagtaaaagaaatgatatttgtgtagtaag |
4591 |
T |
|
| Q |
274 |
aatgatcat |
282 |
Q |
| |
|
|||| |||| |
|
|
| T |
4590 |
aatggtcat |
4582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 16436991 - 16437063
Alignment:
| Q |
21 |
aatcgttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttcccaagcacaacaatc |
93 |
Q |
| |
|
||||||||||||| | || |||||||||||| |||| |||||||||| ||||||||||| | ||||||||| |
|
|
| T |
16436991 |
aatcgttgagatccaattctgtaactcttccagtagcgttgtcacaagttacaccttcccaggtacaacaatc |
16437063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 16435803 - 16435743
Alignment:
| Q |
21 |
aatcgttgagatcaagttttgtaactcttccggtagtgttgtcacaatggacaccttccca |
81 |
Q |
| |
|
||||||||||||| | || |||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
16435803 |
aatcgttgagatccaattctgtaactcttccagtagcgttgtcacaagttacaccttccca |
16435743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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