View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_22 (Length: 293)
Name: NF17898_low_22
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_22 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 158111 - 158373
Alignment:
| Q |
13 |
acagaaggatgaggttaataagtacatttcctctaggagacattggttaccaaagctgacttcaaccttctagggatattagtaatgaagggtcattccc |
112 |
Q |
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| T |
158111 |
acagaaggacgaggttaataagtacatttcctctaggagacattggttaccaaagctgacttcaaccttctagggatattagtaatgaagggtcattccc |
158210 |
T |
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| Q |
113 |
attttttggtgatagagacaagactccttaagtttcaatgtaattagttaccatttgtagctggtttcttttattttactgtataatgtttttcaattaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
158211 |
attttttggtgatagagacaagactccttaagtttcaatgtaattagttaccatttgtagctggtttcttttattttactgtataatgtttttcaattaa |
158310 |
T |
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| Q |
213 |
catttgttgctattgaatgatgtatgtctcatgaatgatggttccattttggctaaaatacaa |
275 |
Q |
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| T |
158311 |
catttgttgctattaaatgatgtatgtctcatgaatgatggttccattttggccaaaatacaa |
158373 |
T |
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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 6911881 - 6911819
Alignment:
| Q |
14 |
cagaaggatgaggttaataagtacatttcctctaggagacattggttaccaaagctgacttca |
76 |
Q |
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| T |
6911881 |
cagaaggatgaggtcactaagtacatttcctctaggagagattggttaccaaaactgacttca |
6911819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 6911720 - 6911647
Alignment:
| Q |
116 |
ttttggtgatagagacaagactccttaagtttcaatgtaattagttaccatttgtagctggtttcttttatttt |
189 |
Q |
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| T |
6911720 |
ttttggtgataaagacaagaatccttaggtttcaatgcaattagttacaatttgtagctggttaattttatttt |
6911647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 15462 - 15402
Alignment:
| Q |
14 |
cagaaggatgaggttaataagtacatttcctctaggagacattggttaccaaagctgactt |
74 |
Q |
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| T |
15462 |
cagaaggatgaggtcaataagtacaattcctctaggagagattggttaccaaagctaactt |
15402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 24297 - 24237
Alignment:
| Q |
14 |
cagaaggatgaggttaataagtacatttcctctaggagacattggttaccaaagctgactt |
74 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||| |
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| T |
24297 |
cagaaggatgaggtcaataagtacaattcctctaggagagattggttaccaaagctaactt |
24237 |
T |
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