View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17898_low_26 (Length: 263)
Name: NF17898_low_26
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34301323 - 34301464
Alignment:
| Q |
1 |
attataagcttcttttcacatcataatattatgcttagaatttgtttacactagtagagattttgaaacaatacactagcaactattataacaaacacaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34301323 |
attataagcttcttgtcacatcataatattatgcttagaatttgtttacactagtagagattttgaaacaatacactagcaactattataacaaacacaa |
34301422 |
T |
|
| Q |
101 |
atatatatcattgctgatttttatccttaaactatatttgtg |
142 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34301423 |
atatataacattgctgatttttatccttaaactatatttgtg |
34301464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 34301530 - 34301582
Alignment:
| Q |
208 |
tgtcaggctcaaaagatccattagtgatatcattcggcgagatgctcatagat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34301530 |
tgtcaggctcaaaagatccattagtgatatcattcggcgagatgctcatagat |
34301582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University