View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_27 (Length: 262)
Name: NF17898_low_27
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25890055 - 25890298
Alignment:
| Q |
1 |
tgatgaattcatgaagatgatgatgatgaaattattttgatctattatatttgtttatttatttatgcttgttttggagtaaactagaaacggcgatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25890055 |
tgatgaattcatgaagatgatgatgatgaaattattttgatctattatatttgtttatttatttatgcttgttttggagtaaactagaaatggcgatata |
25890154 |
T |
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| Q |
101 |
tttcggctttacaatccttaccattgggatcgtattgcttcattataatagatgtgggtttcatgttgatttattgagattcatttgaatgaaataaggg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25890155 |
tttcggctttacaatccttaccattgggattgtattgcttcattataatagatgtgggtttcatgttgatttattgagattcatttgaatgaaataaggg |
25890254 |
T |
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| Q |
201 |
tcggagatgagagttttgtagaacttgccaacgcactgaattgt |
244 |
Q |
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| T |
25890255 |
tcggagatgagagttttgtagaacttgctaacgcactgaattgt |
25890298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 25907543 - 25907743
Alignment:
| Q |
1 |
tgatgaattcatgaagatgatgatgatgaaattattttgatctattatatttgtttatttatttatgcttgttttggagtaaactagaaacggcgatatg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25907543 |
tgatcaattcatgaagatgatgatgatgaaattattttgatatattatatttgtttatttatttatgcttgttttggagtaaactagaaacggcgaaatg |
25907642 |
T |
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| Q |
101 |
tttcggctttacaatccttaccattgggatcgtattgcttcatta-taatagatgtgggtttcatgttgatttattgagattcatttgaatgaaataagg |
199 |
Q |
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| T |
25907643 |
-ttcggctttacaatcctcacagctgggatcgtcttgcttctttagtaatagatgtgggtttcatgctgatttattgagatgcatttgaatgaaataagg |
25907741 |
T |
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| Q |
200 |
gt |
201 |
Q |
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|| |
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| T |
25907742 |
gt |
25907743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 25902030 - 25902116
Alignment:
| Q |
150 |
agatgtgggtttcatgttgatttattgagattcatttgaatgaaataagggtcggagatgagagttttgtagaacttgccaacgcac |
236 |
Q |
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| T |
25902030 |
agatgtgggtttcttgcagatttctcgagatgcatttgaacgaaataaggatcggagatgagagttttgtagaacttgctaacgcac |
25902116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 25916057 - 25916143
Alignment:
| Q |
150 |
agatgtgggtttcatgttgatttattgagattcatttgaatgaaataagggtcggagatgagagttttgtagaacttgccaacgcac |
236 |
Q |
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| T |
25916057 |
agatgtgggtttcttgcagatttctcgagatgcatttgaacgaaataaggatcggagatgagagttttgtagaacttgctaacgcac |
25916143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 25376451 - 25376379
Alignment:
| Q |
155 |
tgggtttcatgttgatttattgagattcatttgaatgaaataagggtcggagatgagagttttgtagaacttg |
227 |
Q |
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| T |
25376451 |
tgggtttcgttttgatttattgcgatgcatttgaacgaagtgaggatcggagatgagagttttgaaaaacttg |
25376379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 98877 - 98905
Alignment:
| Q |
1 |
tgatgaattcatgaagatgatgatgatga |
29 |
Q |
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| T |
98877 |
tgatgaattcatgaagatgatgatgatga |
98905 |
T |
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