View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_3 (Length: 555)
Name: NF17898_low_3
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 41 - 520
Target Start/End: Original strand, 45304018 - 45304483
Alignment:
| Q |
41 |
atttcatttcatagaaagaagaataatggaatgggggagtgcccaaaagctactgacttgacttgaatgaatatgcacaagccccaaaagcccagctaag |
140 |
Q |
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| T |
45304018 |
atttcatttcatagaaagaagaataatggaatgggggagtgcccaaaagctactgacttgacttgaatgaatatgcacaagccccaaaagcccagctaag |
45304117 |
T |
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| Q |
141 |
tttcataacagcagccccgacagaaaggaagtaatgcagcttttaggacccttttcatttcccaacaaattactactacaacgaaaccttttcttttctt |
240 |
Q |
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| T |
45304118 |
tttcataacagcagccccgacagaaaggaaggaatgcagcttttaggacccttttcatttcccaacaaattactactacaacgaaaccttttcttttctt |
45304217 |
T |
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| Q |
241 |
ttcttacctactatactatggtcctttcttactttcccctatacctagttactttgtgcattactgcatataagttactactttttactagttatctaan |
340 |
Q |
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| T |
45304218 |
-----acctact-----atggtcctttcttactttcccctatacctagttactttgtgcattgctgcatataagttactactttttactagttatctaa- |
45304306 |
T |
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| Q |
341 |
nnnnnnnnnnnnnnatgcatataatcagtgcttagtgggtggataaagatccttatgattattattccttaaaagactttttggtgattgattaagggag |
440 |
Q |
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| T |
45304307 |
---tctctctctctatgcatataatcagtgcttagtgggtggataaagatccttatgattattattccttaaaagactttttggtgattgattaagggag |
45304403 |
T |
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| Q |
441 |
gaatgtcccaacccaaagttgtaaaggaaaaagagatggtatttgtctggtttagtacatacatgcatgatgatgaatga |
520 |
Q |
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| T |
45304404 |
gaatgtcccaacccaaagttgtaaaggaaaaagagatggtatttgtctggtttagtacatacatgcatgatgatgaatga |
45304483 |
T |
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