View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_30 (Length: 240)
Name: NF17898_low_30
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 43673024 - 43672811
Alignment:
| Q |
18 |
aatactatactaaagtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgata |
117 |
Q |
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| T |
43673024 |
aatactatactaaagtctaaaccaccaaatatcgacacaacatctgtcatactcttttaagtttcttccctaccaaactcatatggactaaatagtgata |
43672925 |
T |
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| Q |
118 |
aaaataaagagtgaggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatgg |
217 |
Q |
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| T |
43672924 |
aaaataaagagtgaggaaggaatgaaggaccatatattatgaaaccaagtcaaccataaaaatggatccgtaagttataagaaactatcaaataaaatgg |
43672825 |
T |
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| Q |
218 |
aatcttgcctttgc |
231 |
Q |
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|||||||||||||| |
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| T |
43672824 |
aatcttgcctttgc |
43672811 |
T |
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