View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_31 (Length: 240)
Name: NF17898_low_31
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 521345 - 521125
Alignment:
| Q |
11 |
gagatccatctcgcgctttgtgccaacaacaaagagatgagcccaagcagcatcagctctatcaccaaggatcagttcaagttgattaaatataaataat |
110 |
Q |
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| T |
521345 |
gagatccatctcgcgctttgtgccaacaacaaagagataagcccaagcagcatcagctctatcaacaaggatcagttcaagttaattaaatatatataat |
521246 |
T |
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| Q |
111 |
--nnnnnnnnncaatgaagttgccaaagattctgatagaaaactgaattaaggtaagcatattattattgaatgttgacactggnnnnnnnnnnnttctc |
208 |
Q |
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| T |
521245 |
aaaaaaaaaaacaatgaagttgccaaagattctgatagaaaactgaaataaggtaagcatattattattgaatgttcacactggaaaaaataaaattctc |
521146 |
T |
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| Q |
209 |
tgctactgatacaaagatgat |
229 |
Q |
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||||||||||||||||||||| |
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| T |
521145 |
tgctactgatacaaagatgat |
521125 |
T |
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