View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_32 (Length: 236)
Name: NF17898_low_32
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 38026919 - 38026734
Alignment:
| Q |
37 |
acaatataattagatccaaattaaaagctatgactagttgtcatttatctctgaaatcatttcatatgtgatcaagatataaaaaccattacacccaatt |
136 |
Q |
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| T |
38026919 |
acaatataattagatccaaattaaaagctataactagttgtcatttatctctgaaatcatttaatatgtgatcaagatataaaaaccattacacccaatt |
38026820 |
T |
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| Q |
137 |
atactgaataaaactatatttgcatttacatagaatagtatttcacaaccgacatggttcaagcagatcaaattagattcatctca |
222 |
Q |
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| T |
38026819 |
atattgaataaaactatatttgcatttacatagaatagtatttcacaacctacatggttcaagcagaacaaatcagattcatctca |
38026734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 25925395 - 25925455
Alignment:
| Q |
92 |
atcatttcatatgtgatcaagatataaaaaccattacacccaattatactgaataaaacta |
152 |
Q |
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| T |
25925395 |
atcaattcatatgtgatcaagatataaaaatcattaaacacaaatatactaaataatacta |
25925455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 38427535 - 38427614
Alignment:
| Q |
133 |
aattatactgaataaaactatatttgcatttacatagaatagtatttcacaaccgacatggttcaagcagatcaaattag |
212 |
Q |
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| T |
38427535 |
aattaaactgaataaaactaaatttgcattcatattaaatagtgtttcacaacctacatggctcaaatagatccaattag |
38427614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 6298302 - 6298262
Alignment:
| Q |
87 |
ctgaaatcatttcatatgtgatcaagatataaaaaccatta |
127 |
Q |
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| T |
6298302 |
ctgaaatcattttacatgtgatcaagatataaaaagcatta |
6298262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 26157068 - 26157105
Alignment:
| Q |
93 |
tcatttcatatgtgatcaagatataaaaaccattacac |
130 |
Q |
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| T |
26157068 |
tcatttaatatgtgatcaagatataaaaagcattacac |
26157105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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