View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_4 (Length: 482)
Name: NF17898_low_4
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_4 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 506262 - 505808
Alignment:
| Q |
18 |
tattggtgatcaagtaacaaatctaaaagaaggggatttcatagttccaacatacataggcgagtgtgaagaatgtgagaattgtgtttctgggaaaacc |
117 |
Q |
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| T |
506262 |
tattggtgatcaagtaacaaatctaaaagaaggggatttcataattccaacatacataggcgagtgtgaagaatgtgagaattgtgtttctgggaaaacc |
506163 |
T |
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| Q |
118 |
aatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgtccgaggccaaacattataccatgttttgagtt |
217 |
Q |
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| T |
506162 |
aatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgtccgaggccaaacattataccatgttttgagtt |
506063 |
T |
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| Q |
218 |
gtgcttcatggtcggaatatgtggtggttgatatcaattaccttgttaaagttgatccaaacattaatctagcttatgctagtttcatctcatgtgggtt |
317 |
Q |
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| T |
506062 |
gtgcttcatggtcggaatatgtggtggttgatatcaattaccttcttagagttgatccaaacattaatctagcttatgctagtttcatctcatgtgggtt |
505963 |
T |
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| Q |
318 |
ttcaactggttatggagcttgttggaaagaagccaatattgaaagtggttcaactgtagctgtttttggtcttggggctgttggattaggggtatgtatg |
417 |
Q |
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| T |
505962 |
ttcaactggttatggagcttgttggaaagaagccaatattgaaagtggttcaactgtagctgtttttggtcttggggctgttggattaggggtatgtatg |
505863 |
T |
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| Q |
418 |
aacaaaatacaatcttgtatattaatttgtgtttttaggcttaatcgcgcctttg |
472 |
Q |
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| T |
505862 |
aacaaaatacaatcttgtatattaatttgtgtttttaggcttaatcgcgcttttg |
505808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 20052154 - 20051762
Alignment:
| Q |
20 |
ttggtgatcaagtaacaaatctaaaagaaggggatttcatagttccaacatacataggcgagtgtgaagaatgtgagaattgtgtttctgggaaaaccaa |
119 |
Q |
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| T |
20052154 |
ttggtgatgaagtgacaaatatgaaagaaggtgatattataattccaacatatgtaggggagtgtcaagaatgtgtgaattgtgtttcaagaaaaaccaa |
20052055 |
T |
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| Q |
120 |
tttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgtccgaggccaaacattataccatgttttgagttgt |
219 |
Q |
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| T |
20052054 |
tctttgtcttacataccctgtgagattcaccggtctaatgcccgataacacttcaagattgtccgttcgaggccaaagactatatcatgttttgagttgt |
20051955 |
T |
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| Q |
220 |
gcttcatggtcggaatatgtggtggttgatatcaattaccttgttaaagttgatccaaacattaatctagcttatgctagtttcatctcatgtgggtttt |
319 |
Q |
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| T |
20051954 |
gctacatggtcggagtatgtcgttgttgatgtcaactaccttctcaaagtcgatccaaccattaatctagcttatgcaagtttcatctcatgtgggtttt |
20051855 |
T |
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| Q |
320 |
caactggttatggagcttgttggaaagaagccaatattgaaagtggttcaactgtagctgtttttggtcttggggctgttggattaggggtat |
412 |
Q |
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| T |
20051854 |
caactggttatggtgctgcttggaaggaagccaaggttaaaagtggttcaagtgttgctgtgtttggtcttggagctgttggcttaggggtat |
20051762 |
T |
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