View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_6 (Length: 455)
Name: NF17898_low_6
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 50 - 436
Target Start/End: Original strand, 21371034 - 21371419
Alignment:
| Q |
50 |
tgttaattaatcaagattaattagtttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaataa |
149 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371034 |
tgttaattaatcaagattaattactttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaatac |
21371133 |
T |
|
| Q |
150 |
aacacactccttcttcattcttcacaacaatattcatcacatcctaaaccaattacttttctatttacacccctctcattactaaaaacagctataacaa |
249 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21371134 |
aacacactccttcttcattcttcacaataatattcatcacattc-aaaccaattacctttctatttacacccctctcattactaaaaacagctatatcaa |
21371232 |
T |
|
| Q |
250 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371233 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
21371332 |
T |
|
| Q |
350 |
taccacagccaaatttgcattaccagttgattctgaacacaaatcgaaagttttcaaactcttttcaatggctaaccctcacatgag |
436 |
Q |
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| T |
21371333 |
taccacagccaaatttgcattaccagttgattctgaacacaaatccaaagttttcaaactcttttcaatggctaaccctcacatgag |
21371419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 50 - 436
Target Start/End: Complemental strand, 21386523 - 21386138
Alignment:
| Q |
50 |
tgttaattaatcaagattaattagtttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaataa |
149 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386523 |
tgttaattaatcaagattaattactttaaatctttctatccaacctttgagaactcaattggctcattacattgtcaacgctttaacatactataaatac |
21386424 |
T |
|
| Q |
150 |
aacacactccttcttcattcttcacaacaatattcatcacatcctaaaccaattacttttctatttacacccctctcattactaaaaacagctataacaa |
249 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21386423 |
aacacactccttcttcattcttcacaataatattcatcacattc-aaaccaattacctttctatttacacccctctcattactaaaaacagctatatcaa |
21386325 |
T |
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| Q |
250 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
349 |
Q |
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| T |
21386324 |
tggctgatattgagggttcaccaggaagctccatgcatggagtaactggaagagaacaaaccttcatgtcatcagttgcttcaccaatggtaccaactga |
21386225 |
T |
|
| Q |
350 |
taccacagccaaatttgcattaccagttgattctgaacacaaatcgaaagttttcaaactcttttcaatggctaaccctcacatgag |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386224 |
taccacagccaaatttgcattaccagttgattctgaacacaaatccaaagttttcaaactcttttcaatggctaaccctcacatgag |
21386138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 21370960 - 21371002
Alignment:
| Q |
16 |
atgaacctttgggatataccatgagttatttccctgttaatta |
58 |
Q |
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||||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
21370960 |
atgaacctttgggatataccatgagttctttcactgttcatta |
21371002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 21386597 - 21386555
Alignment:
| Q |
16 |
atgaacctttgggatataccatgagttatttccctgttaatta |
58 |
Q |
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||||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
21386597 |
atgaacctttgggatataccatgagttctttcactgtttatta |
21386555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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