View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17898_low_7 (Length: 443)
Name: NF17898_low_7
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 47460100 - 47460513
Alignment:
| Q |
12 |
agcataggcacaaacaacaatggcacaacaacaatcatcctcattccttggtcctgacaccgttgacgacttttacttctctgttgtctccgacgatgaa |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47460100 |
agcatagacacaaacaacaatggcacaacaacaatcatcctcattccttggtcctgacaccgtagacgacttttacttctctgttgtctccgacgatgaa |
47460199 |
T |
|
| Q |
112 |
attgaccctaacgtccctgtctccgatgacaagtacgctgaagcattacagtttcaagaaaccttattggcctctgtcatcacttctcaccaaaaccctt |
211 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460200 |
attgaccctaacgttcctgtctccgatgacaagtacgctgaagcattacagtttcaagaaaccttattggcctctgtcatcacttctcaccaaaaccctt |
47460299 |
T |
|
| Q |
212 |
catcctcttccttcttggcaccaccacgttcattaccatgcgtagcatcttcatcaaaaacggtttctgaagagttacagtttcaccaaacccttatgca |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460300 |
catcctcttccttcttggcaccaccacattcattaccatgcgtagcatcttcatcaaaaacggtttctgaagagttacagtttcaccaaacccttatgca |
47460399 |
T |
|
| Q |
312 |
gtcaccaccgttgcactgcgtagcatcttcgtcaaagtctattgaagttggcattgtcatcaaagcagatgaaccgtcttctccaatcatcatttgcgag |
411 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460400 |
gtcaccaccgttgcactgtgtagcatcttcgtcaaagtctattgaagttggcattgtcatcaaagcagatgaaccgtcttctccaatcatcatttgcgag |
47460499 |
T |
|
| Q |
412 |
atttgtgccgaaac |
425 |
Q |
| |
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|||||||||||||| |
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| T |
47460500 |
atttgtgccgaaac |
47460513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 47466724 - 47467008
Alignment:
| Q |
29 |
caatggcacaacaacaatcatcctcattccttggtcctgacaccgttgacgacttttacttctctgttgtctccgacgatgaaattgaccctaacgtccc |
128 |
Q |
| |
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||||||| |||||| ||| ||||||||| |||| | |||||| || |||||| ||||||||||| |||||| || | |||| ||||||| || |
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| T |
47466724 |
caatggcgcaacaagcatcctcctcattcattggccttgacactgtagacgacctttacttctctattgtctttgatcaagaaactgaccct---gtttt |
47466820 |
T |
|
| Q |
129 |
tgtctccgatgacaagtacgctgaagcattacagtttcaagaaaccttattggcctctgtcatcacttctcaccaaaacccttcatcctcttccttcttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| || ||||||| || || |
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| T |
47466821 |
tgtctccgatgacaagtacgctgaagcattacagttccaagaaaccttaatggcctctgccatcacttctcaccaaaaccactcgtcctctttctcctct |
47466920 |
T |
|
| Q |
229 |
gcaccaccacgttcattaccatgcgtagcatcttcatcaaaaacggtttctgaagagttacagtttcaccaaacccttatgcagtcac |
316 |
Q |
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||||||||| | || || |||||||| |||||||||||||| || ||| ||||||| ||| || ||||||||||| |||||| |
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| T |
47466921 |
tcaccaccaccattttttccgtgcgtagcgtcttcatcaaaaactgtcgatgatgagttactgttcaacgaaacccttatgaagtcac |
47467008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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