View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17898_low_9 (Length: 414)
Name: NF17898_low_9
Description: NF17898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17898_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 122 - 398
Target Start/End: Complemental strand, 521783 - 521505
Alignment:
| Q |
122 |
ataataaactggacattttaatgactgaccttgctcattgctaaaccaacagcgagacaactatacagaacatgagtgatcccgagaacaaataaaaacc |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
521783 |
ataataaactggaaattttaatgactgaccttgctcatcgctaaaccaacagcgagacaactatacagaacatgagtgatcccgagaacaaataaaaacc |
521684 |
T |
|
| Q |
222 |
ggtgcagctgttcaagaccttcatatgaaacaaatggttcatgaccctgcattcaccaattaatattttagaagaactatttgtagtgttgcaaagaaac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
521683 |
ggtgcagctgttcaagaccttcatatgaaacaaatggttcatgaccctgcattcaccaattaatattttagaagaactatttgtagtgttgcaaagaaac |
521584 |
T |
|
| Q |
322 |
agcatttaatctcagttttttcaacacaag--ataacatccttcattttacaattgaagaatgctatattacctctcca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
521583 |
agcatttaatctcagttttttcaacacaagatataacatccttcattttacaattgaagaatgctatattacctctcca |
521505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 521880 - 521813
Alignment:
| Q |
18 |
caatgggtagaaaatatacgaaacatgttcattcttctatagaactctagtagatacccttattgaat |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
521880 |
caatgggtagaaaatataagaaacatgttcattcttctattgaactctagtagatacccatattgaat |
521813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 8826946 - 8826866
Alignment:
| Q |
190 |
aacatgagtgatcccgagaacaaataaaaaccggtgcagctgttcaagaccttcatatgaaacaaatggttcatgaccctg |
270 |
Q |
| |
|
||||||||||||||| |||||||| | ||| || || ||||| ||||||| |||||| ||| |||||| |||||||||||| |
|
|
| T |
8826946 |
aacatgagtgatcccaagaacaaacacaaagcgatgaagctgctcaagactttcataagaagcaaatgattcatgaccctg |
8826866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University