View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17899_high_1 (Length: 603)
Name: NF17899_high_1
Description: NF17899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17899_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 15 - 583
Target Start/End: Complemental strand, 42593753 - 42593185
Alignment:
| Q |
15 |
gagatgaagggctcaatggggtatcatcctnnnnnnngagcacttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttg |
114 |
Q |
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| T |
42593753 |
gagatgaagggctcaatggggtatcatcctaaaaaaagagcacttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttg |
42593654 |
T |
|
| Q |
115 |
tctttacacttgttgcacttgtgttgttcattcgcctaatatgtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagt |
214 |
Q |
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| T |
42593653 |
tctttacacttgttgcacttgtgttgttcattcgcctaatatgtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagt |
42593554 |
T |
|
| Q |
215 |
tggcttattgacgcaactccttgagaatattttctcgagaccacgaggaaggatttccattttggcaggtctttttagtgttgtaatactgtgtgtgcaa |
314 |
Q |
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| T |
42593553 |
tggcttattgacacaactccttgagaatattttctcgagaccacgaggaaggatttccattttggcaggtctttttagtgttgtaatactgtgtgtgcaa |
42593454 |
T |
|
| Q |
315 |
catggagtgccaattatggttactctttctctccattaccagaatgataaggtagtgtcggatcaagaagccgttcttaatgatttgtcaatttgtacaa |
414 |
Q |
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| T |
42593453 |
catggagtgccaattatggttactctttctctccattaccagaatgataaggtagtgttggatcaagaagccgttcttaatgatttgtcaacttgtacaa |
42593354 |
T |
|
| Q |
415 |
caatggggttggtaactgtcatctgcatcgatgtatctggcgagataatatcaaaaccaatggaagttaacaaaatttggataggggaggcggagacaga |
514 |
Q |
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| T |
42593353 |
caatggggttggtaactgtcatctgcatcgatgtatctggcgagataatatcaaaaccaatggaagttaacaaaatttggataggggaggcggagacaga |
42593254 |
T |
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| Q |
515 |
tatcaacaaggttgaggaatcagaaacatgtccagttgtacttgacaagcttaaacaaggagttgcttt |
583 |
Q |
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| T |
42593253 |
tatcaacaaggttgaggaatcagaaacatgtccagttgtacttgacaagcttaaacaaggagttgcttt |
42593185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 8e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 57 - 454
Target Start/End: Original strand, 4091082 - 4091470
Alignment:
| Q |
57 |
cttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttgtctttacacttgttgcacttgtgttgttcattcgcctaatat |
156 |
Q |
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| T |
4091082 |
cttttggaaaaactaattgagaagccgatttcctaccttgacaaagcttctctttttatctttacattggttgcatttgtggtgttcattcaccaaattt |
4091181 |
T |
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| Q |
157 |
gtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagttggcttattgacgcaactccttgagaatattttctcgagacc |
256 |
Q |
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|| ||||||||| ||||| | || ||||||||||| |||| ||||||||||||| |||| | ||||||||||||||||||| | |||||| |
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| T |
4091182 |
gtgaaaaagatggagatggtgatggattgccagatatgaaag---------tttcagttggcttgttgatggaactccttgagaatattttgttgagacc |
4091272 |
T |
|
| Q |
257 |
acgaggaaggatttccattttggcaggtctttttagtgttgtaatactgtgtgtgcaacatggagtgccaattatggttactctttctctccattaccag |
356 |
Q |
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| ||||||||||||||||| | ||| || |||||| | || |||| ||| ||||||||||||| ||||| |||||||||| |||||||||||||||| |
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| T |
4091273 |
aagaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaatgccacgtatggttactttttctctccattaccac |
4091372 |
T |
|
| Q |
357 |
aatgataaggtagtgtcggatcaagaagccgttcttaatgatttgtcaatttgtacaacaatggggttggtaactgtcatctgcatcgatgtatctgg |
454 |
Q |
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| T |
4091373 |
attaatgatgtagtgccagacgaagaagctgtttttaatgatttatctgcttgtacaaccatggggttggtaactgtcatctgcgttgatgtatctgg |
4091470 |
T |
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