View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17899_high_2 (Length: 471)
Name: NF17899_high_2
Description: NF17899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17899_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 36229733 - 36229918
Alignment:
| Q |
15 |
aaaataagggccccaaagaagatgaatatgtatttgcaggaattaatatcaaaattcatttaagctcattgttgaaattggagtataatggtggttgcat |
114 |
Q |
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| T |
36229733 |
aaaataagggccccaaagaagatgaatatgtatttgcaggaattaatatcaaaattcatttaagctcattgttgaaattggagtataatggtggttgcat |
36229832 |
T |
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| Q |
115 |
ctgaccaaagaaaccccacacacagctcataatctgcggctattactatggattgaaatatgatgtgtttcagtcagacatttggt |
200 |
Q |
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| T |
36229833 |
ctgaccaaagaaaccccacacacagctcataatctgcggctattactatggattgaaatatgatgcgtttcagtcagacatttggt |
36229918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 20146467 - 20146582
Alignment:
| Q |
210 |
gagaaatactaattacaaacgctttggcacccgctttttgacacacgctttattgtgatgacacgttgccaattcatttaaactcattacttgtttaccg |
309 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
20146467 |
gagaaatgctaattacaaacgctctggcacccgctttttgacacacgctttattgtgatgccacgttaccaattcatttaaactcattactagtttaccg |
20146566 |
T |
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| Q |
310 |
gttcaaccagttagcc |
325 |
Q |
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| T |
20146567 |
gtttaaccagttagcc |
20146582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 356 - 452
Target Start/End: Original strand, 20146613 - 20146709
Alignment:
| Q |
356 |
actgtggtctctccgttcaccatttgaaacagcaggatacttcaccacgactgttctgtctctgtttgtattatgaggtattgtctatggtagccac |
452 |
Q |
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| T |
20146613 |
actgtggtctctccgttcaccatttgagacagcaggatacttcaccacgaccattctgtctctgtttgtattctgaggtattgtctatggtagccac |
20146709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 38039784 - 38039971
Alignment:
| Q |
15 |
aaaataagggccccaaagaagatgaatatgtatttgcaggaattaatatcaaaattcatttaagctcattgttgaaattggagtataatggtggttgcat |
114 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
38039784 |
aaaataagggacccaaagaagatgaataagtatttgcaggaattaatatgaaaattcattttagctcattgttgaaattgtagtataatagtggttgcat |
38039883 |
T |
|
| Q |
115 |
ctgaccaaagaaaccccacacac--agctcataatctgcggctattactatggattgaaatatgatgtgtttcagtcagacatttggt |
200 |
Q |
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| T |
38039884 |
ctgaccaaagaaaccccacacacaaagctcataatctgcgtctattactatggattgaaatatgatgtgtttcagtcagatatttggt |
38039971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 25100139 - 25100256
Alignment:
| Q |
208 |
aagagaaatactaattacaaacgctttggcacccgctttttgacacacgctttattgtgatgacacgttgccaattcatttaaactcattacttgtttac |
307 |
Q |
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||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25100139 |
aagagaaatgctaattacaaacgctctagcacccgctttttgacacacgctttattgtgatgccacgttgccaattcatttaaactcattacttgtttac |
25100238 |
T |
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| Q |
308 |
cggttcaaccagttagcc |
325 |
Q |
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| T |
25100239 |
cggttcaaccagttagcc |
25100256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 358 - 452
Target Start/End: Original strand, 25100289 - 25100383
Alignment:
| Q |
358 |
tgtggtctctccgttcaccatttgaaacagcaggatacttcaccacgactgttctgtctctgtttgtattatgaggtattgtctatggtagccac |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25100289 |
tgtggtctctccgttcaccatttgaaacagcaggatacttcaccacgaccattctgtctctgtttgtattctgaggtattgtctatggtagccac |
25100383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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