View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17899_high_3 (Length: 360)
Name: NF17899_high_3
Description: NF17899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17899_high_3 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 7423364 - 7423019
Alignment:
| Q |
15 |
tctacagttacagttgaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagata |
114 |
Q |
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| T |
7423364 |
tctacagtaacagtagaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagata |
7423265 |
T |
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| Q |
115 |
gatgggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaag |
214 |
Q |
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| T |
7423264 |
gatgggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaag |
7423165 |
T |
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| Q |
215 |
agaagctagtgaggattgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgg |
314 |
Q |
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| T |
7423164 |
agaagctagtgaggattgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgg |
7423065 |
T |
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| Q |
315 |
gacaatccatatgagtttataccagagaggtttattggtaataata |
360 |
Q |
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| T |
7423064 |
gacaatccatatgagtttatacctgagaggtttattggtaataata |
7423019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 350
Target Start/End: Complemental strand, 7429758 - 7429438
Alignment:
| Q |
30 |
gaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagatagatgggttgaagaga |
129 |
Q |
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| T |
7429758 |
gaatgggcaatttctgagcttgtgaaaaggccagagattatcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgaagaga |
7429659 |
T |
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| Q |
130 |
aagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaagctagtgagga |
229 |
Q |
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| T |
7429658 |
aagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgtgacaccaatgttagtgccaagagaagctactgagaa |
7429559 |
T |
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| Q |
230 |
ttgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgag |
329 |
Q |
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| T |
7429558 |
ttgcaatgttgatggttatgatataccaaaagggactatgattcttgtcaatacttggacaattggaagagattctgatagttgggataatccatatgaa |
7429459 |
T |
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| Q |
330 |
tttataccagagaggtttatt |
350 |
Q |
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| T |
7429458 |
tttataccagagaggtttatt |
7429438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 7415701 - 7415365
Alignment:
| Q |
19 |
cagttacagttgaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagatagatg |
118 |
Q |
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| T |
7415701 |
cagtaacagtagaatgggcaatctccgagctggttagaaaaccagagatcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatg |
7415602 |
T |
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| Q |
119 |
ggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaa |
218 |
Q |
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| T |
7415601 |
ggttgaagagaaagacattgcgaatttaccttatgtttacgcaattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaa |
7415502 |
T |
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| Q |
219 |
gctagtgaggattgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggaca |
318 |
Q |
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| T |
7415501 |
gctagagaggattgcaaagttgatggttacgatattcccaaagggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggaga |
7415402 |
T |
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| Q |
319 |
atccatatgagtttataccagagaggtttattggtaa |
355 |
Q |
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| T |
7415401 |
atccatatgaatttatgcctgagaggtttcttggtaa |
7415365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 19799 - 19836
Alignment:
| Q |
312 |
tgggacaatccatatgagtttataccagagaggtttat |
349 |
Q |
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| T |
19799 |
tgggagaatccatatgagtttaaaccagagaggtttat |
19836 |
T |
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