View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17899_low_5 (Length: 246)
Name: NF17899_low_5
Description: NF17899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17899_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 7423040 - 7422835
Alignment:
| Q |
19 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
118 |
Q |
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| T |
7423040 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
7422941 |
T |
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| Q |
119 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7422940 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaatgatatgaagaaagaggatttgaatatggaggagatttt |
7422841 |
T |
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| Q |
219 |
tgggct |
224 |
Q |
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|||||| |
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| T |
7422840 |
tgggct |
7422835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 7415381 - 7415176
Alignment:
| Q |
19 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
118 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
7415381 |
gagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctggttaccctcttggta |
7415282 |
T |
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| Q |
119 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttt |
218 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7415281 |
ttaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttt |
7415182 |
T |
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| Q |
219 |
tgggct |
224 |
Q |
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|||||| |
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| T |
7415181 |
tgggct |
7415176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 7429418 - 7429238
Alignment:
| Q |
47 |
taaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaagtttggctaa |
146 |
Q |
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||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
7429418 |
taaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggctaa |
7429319 |
T |
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| Q |
147 |
tttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttttgggctcac |
227 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7429318 |
cttgttgcatggatttaattggagattacctaatgatatgaaaaaagaggatttaaatatggaggagatttttgggctcac |
7429238 |
T |
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