View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_high_14 (Length: 281)
Name: NF1789_high_14
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 37771761 - 37771599
Alignment:
| Q |
1 |
aatagtattcattactctctttataaaa-cattacccatacaatccttcaacttctcttaaatccccacacccttaatttcttcagagcttctattatat |
99 |
Q |
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| T |
37771761 |
aatagtattcattactctctttataaaaacattacccatacaatccttcaacttctcttaaatctccacacccttaatttcttcagagcttctattatat |
37771662 |
T |
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| Q |
100 |
gaacacttgtgatcgttgccaacaaatcaactagcaaggaacttcatcacccaatccaattac |
162 |
Q |
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| T |
37771661 |
gaacacttgtgatcgttgccaacaaatcaactagcaaggaacttcatcacccaattcaattac |
37771599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 37771552 - 37771477
Alignment:
| Q |
205 |
aaggaggagccaagtcccaaaaagtacaaag-aaaaggtcacttaacacaaagcaccagagaggtattgagggcaaac |
281 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37771552 |
aaggaggagccaagtcccaaaaagtacagagaaaaaggtcacttaacacaaagcaccagaga--tattgagggcaaac |
37771477 |
T |
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