View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_high_2 (Length: 473)
Name: NF1789_high_2
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 39610733 - 39610292
Alignment:
| Q |
18 |
agttcagtaggtctgcccagcagtgcttccctcctctccctctcagccttttcttcaatttcactttgcctccgcttttaaaaaactcatccatttctgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610733 |
agttcagtaggtctgcccagcagtgcttccctcctctccctctcagccttttcttcaatttcactttgcctccgcttttaaaaaactcatccatttctgc |
39610634 |
T |
|
| Q |
118 |
ttcagcttgttccatattttttctctctcagcatctggagttcagaaacaccacatgttaactaaattatgtaaaagatggtacagtactgattccacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39610633 |
ttcagcttgttccatattttttctctctcagcatctggagttcagaaacaccacatgttaactaaattgtgtaaaagatggtacagtactgattccacat |
39610534 |
T |
|
| Q |
218 |
agcaacaagttcagtgtaatcctttcaatactacaagatctgaagg-nnnnnnnnntacaaacttaggcttttatacgttgcaggaaaagaaatcaataa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610533 |
agcaacaagttcagtgtaatcctttcaatactacaagatctgaaggaaaaaaaaaatacaaacttaggcttttatacgttgcaggaaaagaaatcaataa |
39610434 |
T |
|
| Q |
317 |
tgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctcttccagctcaagataatacttcaattttctcattttttccc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610433 |
tgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctcttccagctcaagataatacttcaattttctcattttttccc |
39610334 |
T |
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| Q |
417 |
tctcctgtttcctggagggtaaaatcctagagatacgctcct |
458 |
Q |
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| T |
39610333 |
tctcctgtttcctggagggtaaaatcctagagatacgctcct |
39610292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 301 - 450
Target Start/End: Original strand, 40159258 - 40159407
Alignment:
| Q |
301 |
gaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctcttccagctcaagataatacttcaat |
400 |
Q |
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||||| |||||||||| | |||||| ||||| |||||||||||| || | ||| ||| ||| || |||| ||||||| || |||||||||||||||| |
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| T |
40159258 |
gaaaacaaatcaataacaattaccttcacgctcccgagcttcttcctcctcacgcaatttctgtcttttctcttcttccaccttaagataatacttcaat |
40159357 |
T |
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| Q |
401 |
tttctcattttttccctctcctgtttcctggagggtaaaatcctagagat |
450 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
40159358 |
tttctcattttttccctctcctgtttcctggagagtaaaatcttagagat |
40159407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 40158817 - 40158877
Alignment:
| Q |
19 |
gttcagtaggtctgcccagcagtgcttccctcctctccctctcagccttttcttcaatttc |
79 |
Q |
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|||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
40158817 |
gttcagcaggtctgcccaacaatgcttccctcttctccctctcagccttttcttcaatttc |
40158877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 33945429 - 33945574
Alignment:
| Q |
287 |
tttatacgttgcaggaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctcttccagctcaa |
386 |
Q |
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|||||| ||| |||| ||| |||| || ||||| |||||| | |||||||||||||||| || | || |||||| | ||||| ||||||| | || |
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| T |
33945429 |
tttatatgttccaggcaaacaaattaaaaatgattaccttcatgcttccgagcttcttcctcctcattcaatttttgctgtctctgttcttccaaccgaa |
33945528 |
T |
|
| Q |
387 |
gataatacttcaattttctcattttttccctctcctgtttcctgga |
432 |
Q |
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|||||| |||||| || ||||||||||||||||||||||||||||| |
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| T |
33945529 |
gataatgcttcaacttcctcattttttccctctcctgtttcctgga |
33945574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 40158945 - 40158993
Alignment:
| Q |
136 |
ttttctctctcagcatctggagttcagaaacaccacatgttaactaaat |
184 |
Q |
| |
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|||| ||||||||| |||| |||||||||||||| |||||||| ||||| |
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| T |
40158945 |
ttttttctctcagcctctgcagttcagaaacaccgcatgttaattaaat |
40158993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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