View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1789_high_21 (Length: 253)
Name: NF1789_high_21
Description: NF1789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1789_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 802926 - 803019
Alignment:
| Q |
137 |
ggttccttagaatctcatgcttaagtgaattgcaccgcatctaagtcttcgcactaagaacaaggtgatatcaagctctcaatgcagatttctg |
230 |
Q |
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| T |
802926 |
ggttccttagaatctcatgcttaagtgaattgcaccgcatctacgtcttcgcattaagaacaaggtgatatcaagctctcaatgcagatttctg |
803019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 802806 - 802889
Alignment:
| Q |
17 |
aggtattacagtaacataacacaaggtgatatcgaattatcaacgcaagtttctggggtgcaatcatttattaatctcaacaag |
100 |
Q |
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| T |
802806 |
aggtattacagtaacataacacaaggtgatatcgaattatcaacgcaagtttctggggtgcaatcatttattaatctcaacaag |
802889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 1940364 - 1940399
Alignment:
| Q |
187 |
gcactaagaacaaggtgatatcaagctctcaatgca |
222 |
Q |
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| T |
1940364 |
gcactaagaacaaggtgatatcaaactctcaatgca |
1940399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 7431797 - 7431874
Alignment:
| Q |
146 |
gaatctcatgcttaagtga-attgcaccgcatctaagtcttcgcactaagaacaaggtgatatcaagctctcaatgca |
222 |
Q |
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| T |
7431797 |
gaatctcatgcttaagtgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaatgca |
7431874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 23766663 - 23766696
Alignment:
| Q |
191 |
taagaacaaggtgatatcaagctctcaatgcaga |
224 |
Q |
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| T |
23766663 |
taagaacaaggtgatatcaagctctcaacgcaga |
23766696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 23816511 - 23816544
Alignment:
| Q |
191 |
taagaacaaggtgatatcaagctctcaatgcaga |
224 |
Q |
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| T |
23816511 |
taagaacaaggtgatatcaagctctcaacgcaga |
23816544 |
T |
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